| Protein: | VRN2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 440 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VRN2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
573.0 | [0..1] | [440..1] |
|
|
492.0 | [0..5] | [403..273] |
|
|
490.0 | [0..5] | [401..244] |
|
|
483.0 | [0..4] | [401..268] |
|
|
477.0 | [0..5] | [401..266] |
|
|
477.0 | [0..4] | [400..272] |
|
|
472.0 | [0..4] | [401..272] |
|
|
457.0 | [0..4] | [399..269] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR 60
61 KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF KGLQFHLNSS HDLFEFEFKL 120
121 LEEYQTVNVS VKLNSFIFEE EG
|
| Detection Method: |  |
| Confidence: | 1.04 |
| Match: | 2ct5A |
| Description: | Solution Structure of the zinc finger BED domain of the zinc finger BED domain containing protein 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [143-198] |
1 11 21 31 41 51
| | | | | |
1 SDDDKFEPFS LCSKPRKRRQ RGGRNNTRRL KVCFLPLDSP SLANGTENGI ALLNDG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.549 | a.194.1 | Description not found. |
| View | Download | 0.528 | a.39.1 | EF-hand |
| View | Download | 0.525 | a.189.1 | Description not found. |
| View | Download | 0.460 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.446 | a.5.2 | UBA-like |
| View | Download | 0.430 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.428 | a.4.1 | Homeodomain-like |
| View | Download | 0.371 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.242 | d.58.17 | Metal-binding domain |
| View | Download | 0.207 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
|
Region A: Residues: [199-265] |
1 11 21 31 41 51
| | | | | |
1 NRGLGYPEAT ELAGQFEMTS NIPPAIAHSS LDAGAKVILT TEAVVPATKT RKLSAERSEA 60
61 RSHLLLQ
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.472 | N/A | N/A | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.438 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.433 | N/A | N/A | a.17.1 | p8-MTCP1 |
| View | Download | 0.427 | N/A | N/A | d.344.1 | Description not found. |
| View | Download | 0.408 | N/A | N/A | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.404 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.392 | N/A | N/A | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.375 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.356 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.301 | N/A | N/A | g.3.7 | Scorpion toxin-like |
| View | Download | 0.281 | N/A | N/A | d.372.1 | Description not found. |
| View | Download | 0.265 | N/A | N/A | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.248 | N/A | N/A | d.372.1 | Description not found. |
|
Region A: Residues: [266-440] |
1 11 21 31 41 51
| | | | | |
1 KRQFYHSHRV QPMALEQVMS DRDSEDEVDD DVADFEDRQM LDDFVDVNKD EKQFMHLWNS 60
61 FVRKQRVIAD GHISWACEVF SRFYEKELHC YSSLFWCWRL FLIKLWNHGL VDSATINNCN 120
121 TILENCRNTS VTNNNNNSVD HPSDSNTNNN NIVDHPNDIK NKNNVDNKDN NSRDK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
