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Protein Overview: VRN2_ARATH

General Information:
Name(s) found: VRN2_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Polycomb group protein VERNALIZATION 2 OS=Arabidopsis thaliana GN=VRN2 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 440 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEP]
    Biological Process: response to cold [IEP]
    regulation of gene expression by genetic imprinting [IMP]
    vernalization response [IMP]
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR  60
   61 KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF KGLQFHLNSS HDLFEFEFKL 120
  121 LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD 180
  181 SPSLANGTEN GIALLNDGNR GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE 240
  241 AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF 300
  301 EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF 360
  361 WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN NNSVDHPSDS NTNNNNIVDH 420
  421 PNDIKNKNNV DNKDNNSRDK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] FFAS03 1.04 Solution Structure of the zinc finger BED domain of the zinc finger BED domain containing protein 1
    2 View Details [143..198] deduced N/A No confident structure predictions are available.
    3 View Details [199..265] MSA 2.032995 View MSA. No confident structure predictions are available.
    4 View Details [266..440] MSA 4.033982 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle