| Protein: | TF2B2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 312 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TF2B2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
265.0 | [0..1] | [312..1] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MSDAFCSDCK RHTEVVFDHS AGDTVCSECG LVLESHSIDE TSEWRTFANE SGDNDPVRVG 60
61 GPTNPLL
|
| Detection Method: |  |
| Confidence: | 3.07 |
| Match: | 1rlyA |
| Description: | RDC-derived models of the zinc ribbon domain of human general transcription TFIIB (zinc bound structures) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.56373197054355 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 4.94644536450092 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 4.00205139503916 | bayes_pls_golite062009 |
| RNA polymerase activity | 4.00205139503916 | bayes_pls_golite062009 |
| transcription regulator activity | 3.26689775782701 | bayes_pls_golite062009 |
| nucleic acid binding | 2.22680674586367 | bayes_pls_golite062009 |
| binding | 2.0546846758949 | bayes_pls_golite062009 |
| DNA binding | 2.01468878668039 | bayes_pls_golite062009 |
| positive transcription elongation factor activity | 1.49227692053981 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.48570514124545 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.10975425818967 | bayes_pls_golite062009 |
| protein binding | 0.549662583711205 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.536637459961958 | bayes_pls_golite062009 |
| DNA primase activity | 0.494157804587957 | bayes_pls_golite062009 |
| catalytic activity | 0.433059249914853 | bayes_pls_golite062009 |
| RNA polymerase II transcription elongation factor activity | 0.0384907163875292 | bayes_pls_golite062009 |
|
Region A: Residues: [68-312] |
1 11 21 31 41 51
| | | | | |
1 ADGGLTTVIS KPNGSSGDFL SSSLGRWQNR GSNPDRGLIV AFKTIATMAD RLGLVATIKD 60
61 RANEIYKRVE DQKSSRGRNQ DALLAACLYI ACRQEDKPRT VKEICSVANG ATKKEIGRAK 120
121 EYIVKQLGLE TGQLVEMGTI HAGDFMRRFC SNLGMTNQTV KAAQESVQKS EEFDIRRSPI 180
181 SIAAAVIYII TQLSDEKKPL RDISVATGVA EGTIRNSYKD LYPHLSKIIP AWYAKEEDLK 240
241 NLQSP
|
| Detection Method: | |
| Confidence: | 31.69897 |
| Match: | 1c9bA |
| Description: | Transcription factor IIB (TFIIB), core domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 6.34389570239956 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase regulator activity | 3.19553060844126 | bayes_pls_golite062009 |
| protein kinase regulator activity | 2.87088741581791 | bayes_pls_golite062009 |
| transcription regulator activity | 2.795846725429 | bayes_pls_golite062009 |
| binding | 2.4204867358489 | bayes_pls_golite062009 |
| nucleic acid binding | 2.04886889839181 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.00665312545368 | bayes_pls_golite062009 |
| DNA binding | 1.94297811210385 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.69439693414478 | bayes_pls_golite062009 |
| kinase regulator activity | 1.65109787211976 | bayes_pls_golite062009 |
| protein binding | 1.47106731485576 | bayes_pls_golite062009 |
| transcription factor activity | 1.21921365719206 | bayes_pls_golite062009 |
| transcription factor binding | 0.749278791251235 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.729629809946521 | bayes_pls_golite062009 |
| positive transcription elongation factor activity | 0.42590121577004 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.138191616709499 | bayes_pls_golite062009 |
| transcription activator activity | 0.0696060248241566 | bayes_pls_golite062009 |
