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View Structure Prediction Details

Protein: PUR2_ARATH
Organism: Arabidopsis thaliana
Length: 532 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUR2_ARATH.

Description E-value Query
Range
Subject
Range
gi|92894066 - gi|92894066|gb|ABE92069.1| Phosphoribosylglycinamide synthetase [Medicago truncatula]
435.0 [0..28] [530..18]

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Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLCASNCY PSSSSINLFS NNNNPTKPFL LSLRFASSNS LPFVAPLKFS TTNHVLSNSR  60
   61 FSSNRIQRRL FLLRCVSEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [80-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQPSLSIGNG GSEERVNVLV IGGGGREHAL CHALKRSPSC DSVLCAPGNA GISSSGDATC  60
   61 VPDLDISDSL AVISFCQKWN VGLVVVGPEV PLVAGLANDL VKAGILTFGP SSQAAALEGS 120
  121 KNFMKNLCHK YNIPTAKYKT FSDASAAKEY IQEQGAPIVI KADGLAAGKG VTVAMELEEA 180
  181 FEAVDSMLVK GVFGSAGCQV VVEEFLEGEE ASFFALVDGE NAIPLESAQD HKRVGDGDTG 240
  241 PNTGGMGAYS PAPVLTKELQ DFVMESIIHP TVKGMAEEGC KFVGVLFAGL MIEKKSGLPK 300
  301 LIEFNVRFGD PECQVLMMRL ESDLAKVLLA ACKGELSGVS LDWSKDSAMV VVMASNGYPG 360
  361 SYEKGSIIKN LEEAERVAPG VKVFHAGTGL DSEGNVVATG GRVLGVTAKG KDLEEARERA 420
  421 YSAVQQINWP GGFFRHDIGW RALRQKQVAT KEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 114.0
Match: 1gsoA
Description: Glycinamide ribonucleotide synthetase (GAR-syn), C-domain; Glycinamide ribonucleotide synthetase (GAR-syn), N-domain; Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ligase activity, forming carbon-nitrogen bonds 2.70117427678868 bayes_pls_golite062009
catalytic activity 2.5009559386228 bayes_pls_golite062009
ligase activity 2.47642734831155 bayes_pls_golite062009
carbamoyl-phosphate synthase activity 2.44033380004582 bayes_pls_golite062009
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 2.37684773430084 bayes_pls_golite062009
phosphoribosylaminoimidazole carboxylase activity 1.50894988737279 bayes_pls_golite062009
phosphoribosylamine-glycine ligase activity 1.37477732460326 bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor 1.11645327303429 bayes_pls_golite062009
binding 0.775987463779474 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 0.351267830197198 bayes_pls_golite062009
CoA carboxylase activity 0.0110559959379195 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle