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View Structure Prediction Details

Protein: AGO10_ARATH
Organism: Arabidopsis thaliana
Length: 988 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGO10_ARATH.

Description E-value Query
Range
Subject
Range
gi|2959781, gi|2... - gi|2959781|emb|CAA11429.1| Zwille protein [Arabidopsis thaliana], gi|25335833|pir||T52134 Zwille pro...
1050.0 [0..1] [988..1]
gi|84688906 - gi|84688906|gb|ABC61502.1| AGO1-1 [Nicotiana benthamiana]
1008.0 [0..16] [988..67]
AGO1A_ORYSJ - Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1
998.0 [0..15] [988..91]
gi|73977123 - gi|73977123|ref|XP_532563.2| PREDICTED: similar to eukaryotic translation initiation factor 2C, 1 [C...
990.0 [0..10] [987..49]
gi|62649646 - gi|62649646|ref|XP_233544.3| PREDICTED: similar to eukaryotic translation initiation factor 2C, 1 [R...
988.0 [0..2] [987..84]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIRQMKDSS ETHLVIKTQP LKHHNPKTVQ NGKIPPPSPS PVTVTTPATV TQSQASSPSP  60
   61 PSKNRSRRRN RGGRKSDQGD VCMRPSSRPR KPPPPSQTTS SAVSVATAGE IVAVNHQMQM 120
  121 GVRKNSNFAP RPGFGTLGTK CIVKANHFLA D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.30103
Match: 1y0fA
Description: No description for 1y0fA was found.

Predicted Domain #2
Region A:
Residues: [152-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPTKDLNQYD VTITPEVSSK SVNRAIIAEL VRLYKESDLG RRLPAYDGRK SLYTAGELPF  60
   61 TWKEFSVKIV DEDDGIINGP KRERSYKVAI KFVARANMHH LGEFLAGKRA DCPQEAVQIL 120
  121 DIVLRELSVK RFCPVGRSFF SPDIKTPQRL GEGLESWCGF YQSIRPT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [319-531]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QMGLSLNIDM ASAAFIEPLP VIEFVAQLLG KDVLSKPLSD SDRVKIKKGL RGVKVEVTHR  60
   61 ANVRRKYRVA GLTTQPTREL MFPVDENCTM KSVIEYFQEM YGFTIQHTHL PCLQVGNQKK 120
  121 ASYLPMEACK IVEGQRYTKR LNEKQITALL KVTCQRPRDR ENDILRTVQH NAYDQDPYAK 180
  181 EFGMNISEKL ASVEARILPA PWLKYHENGK EKD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.522879
Match: 1r4kA
Description: Solution Structure of the Drosophila Argonaute 1 PAZ Domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [532-618]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CLPQVGQWNM MNKKMINGMT VSRWACVNFS RSVQENVARG FCNELGQMCE VSGMEFNPEP  60
   61 VIPIYSARPD QVEKALKHVY HTSMNKT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [619-988]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGKELELLLA ILPDNNGSLY GDLKRICETE LGLISQCCLT KHVFKISKQY LANVSLKINV  60
   61 KMGGRNTVLV DAISCRIPLV SDIPTIIFGA DVTHPENGEE SSPSIAAVVA SQDWPEVTKY 120
  121 AGLVCAQAHR QELIQDLYKT WQDPVRGTVS GGMIRDLLIS FRKATGQKPL RIIFYRDGVS 180
  181 EGQFYQVLLY ELDAIRKACA SLEPNYQPPV TFIVVQKRHH TRLFANNHRD KNSTDRSGNI 240
  241 LPGTVVDTKI CHPTEFDFYL CSHAGIQGTS RPAHYHVLWD ENNFTADGIQ SLTNNLCYTY 300
  301 ARCTRSVSIV PPAYYAHLAA FRARFYLEPE IMQDNGSPGK KNTKTTTVGD VGVKPLPALK 360
  361 ENVKRVMFYC 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.221849
Match: 3dlbA
Description: No description for 3dlbA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle