YRC Public Data Repository - Protein Structure Prediction

Protein:	PSD3B_ARATH
Organism:	Arabidopsis thaliana
Length:	487 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD3B_ARATH.

Description	E-value	Query Range	Subject Range
PSD3A_ARATH - 26S proteasome non-ATPase regulatory subunit 3 homolog A OS=Arabidopsis thaliana GN=RPN3A PE=1 SV=3	394.0	[0..1]	[487..1]
gi\|125606491, gi... - gi\|52076080\|dbj\|BAD46593.1\| putative nuclear antigen 21D7 [Oryza sativa Japonica Group], gi\|32526670...	389.0	[0..1]	[487..1]
PSMD3_TOBAC - Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Nicotiana tabacum GN=21D7 PE=2 SV=1	388.0	[0..1]	[487..1]
PSMD3_DAUCA - Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus carota GN=21D7 PE=1 SV=2	388.0	[0..1]	[487..1]
gi\|109114965 - gi\|109114965\|ref\|XP_001094267.1\| PREDICTED: proteasome 26S non-ATPase subunit 3 isoform 2 [Macaca mu...	381.0	[0..2]	[487..32]
gi\|159128009 - gi\|159128009\|gb\|EDP53124.1\| proteasome regulatory particle subunit (RpnC), putative [Aspergillus fum... gi\|66852632, gi\|... - gi\|71000627\|ref\|XP_754995.1\| proteasome regulatory particle subunit (RpnC) [Aspergillus fumigatus Af...	375.0	[0..2]	[486..131]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQDVEMKDN QTPTQSVVSA PTSTLQNLKE IAALIDTGSY TKEVRRIARA VRLTVGLRRK  60
   61 LTGSVISSFL DFALVP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.803	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins

Predicted Domain #2

Region A:
Residues: [77-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSEAHTRLSS FVPKSDEHDM EVDTASSNSQ APPKHLPAEL EIYCYFIVLL FLIDQKKYNE  60
   61 AKVCSTASIA RLKSVNRRTV DVIASKLYFY YSLSYELTND LAEIRSTLLA LHHSATLRHD 120
  121 ELGQETLLNL LLRNYLHYNL YDQAEKLRSK APRFEAHSNQ QFCRYLFYLG KIRTIQLEYT 180
  181 DAKESLLQAA RKAPVASLGF RIQCNKWAII VRLLLGEI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.045757
Match:	2fo7A
Description:	Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [295-487]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PERSIFTQKG MEKTLRPYFE LTNAVRIGDL ELFGKIQEKF AKTFAEDRTH NLIVRLRHNV  60
   61 IRTGLRNISI SYSRISLQDV AQKLRLNSAN PVADAESIVA KAIRDGAIDA TIDHKNGCMV 120
  121 SKETGDIYST NEPQTAFNSR IAFCLNMHNE AVRALRFPPN THREKESEEK RREMKQQEEE 180
  181 LAKYMAEEDD DDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	1ufmA
Description:	Solution structure of the PCI domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits