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View Structure Prediction Details

Protein: GCSH3_ARATH
Organism: Arabidopsis thaliana
Length: 166 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCSH3_ARATH.

Description E-value Query
Range
Subject
Range
GCSH_ORYSI - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1
GCSH_ORYSA - Glycine cleavage system H protein, mitochondrial precursor - Oryza sativa (Rice)
GCSH_ORYSJ - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1
183.0 [0..1] [164..1]

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Predicted Domain #1
Region A:
Residues: [1-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRMWASST ANALKLSSSA SKSHLLPAFS ISRCFSSVLE GLKYANSHEW VKHEGSVATI  60
   61 GITDHAQDHL GEVVFVELPE ANSSVSKEKS FGAVESVKAT SEILSPISGE VIEVNTKLTE 120
  121 SPGLINSSPY EDGWMIKVKP SSPAELEALM GPKEYTKFCE EEDAAH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.09691
Match: 1dxmA
Description: Protein H of glycine cleavage system
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aminomethyltransferase activity 7.15454688996532 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 6.56199545993139 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 6.56199545993139 bayes_pls_golite062009
acetyl-CoA carboxylase activity 2.30995434688093 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors 1.93346020821958 bayes_pls_golite062009
CoA carboxylase activity 1.92420834470262 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 1.62422217856347 bayes_pls_golite062009
catalytic activity 1.39099902011318 bayes_pls_golite062009
ligase activity 0.56894584941056 bayes_pls_golite062009
binding 0.53993697366231 bayes_pls_golite062009
protein binding 0.396415237274882 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle