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View Structure Prediction Details

Protein: DRP1A_ARATH
Organism: Arabidopsis thaliana
Length: 610 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DRP1A_ARATH.

Description E-value Query
Range
Subject
Range
SDL5A_SOYBN - Dynamin-related protein 5A OS=Glycine max PE=2 SV=1
630.0 [0..1] [610..1]

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Predicted Domain #1
Region A:
Residues: [1-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL  60
   61 PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF AAVRKEIQDE TDRETGRSKA 120
  121 ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI 180
  181 SPANQDLATS DAIKISREVD PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV 240
  241 VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP 300
  301 GIQSLINKTV LELETELSRL GKPI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 2akaB
Description: Structure of the nucleotide-free myosin II motor domain from Dictyostelium discoideum fused to the GTPase domain of dynamin 1 from Rattus norvegicus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.64537357529343 bayes_pls_golite062009
protein binding 1.22129154759482 bayes_pls_golite062009
nucleic acid binding 0.777787753097919 bayes_pls_golite062009
DNA binding 0.479412476059825 bayes_pls_golite062009
purine nucleotide binding 0.442941451960958 bayes_pls_golite062009
purine ribonucleotide binding 0.440672169804309 bayes_pls_golite062009
ribonucleotide binding 0.440612929099368 bayes_pls_golite062009
nucleotide binding 0.433111366205869 bayes_pls_golite062009
transcription regulator activity 0.312171320541728 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [325-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AADAGGKLYS IMEICRLFDQ IFKEHLDGVR AGGEKVYNVF DNQLPAALKR LQFDKQLAMD  60
   61 NIRKLVTEAD GYQPHLIAPE QGYRRLIESS IVSIRGPAEA SVDTVHAILK DLVHKSVNET 120
  121 VELKQYPALR VEVTNAAIES LDKMREGSKK ATLQLVDMEC SYLTVDFFRK LPQDVEKGGN 180
  181 PT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 32.376751
Match: PF01031.11
Description: No description for PF01031.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [507-610]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSIFDRYNDS YLRRIGSNVL SYVNMVCAGL RNSIPKSIVY CQVREAKRSL LDHFFAELGT  60
   61 MDMKRLSSLL NEDPAIMERR SAISKRLELY RAAQSEIDAV AWSK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 39.958607
Match: PF02212.9
Description: No description for PF02212.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle