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View Structure Prediction Details

Protein: CSN8_ARATH
Organism: Arabidopsis thaliana
Length: 197 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSN8_ARATH.

Description E-value Query
Range
Subject
Range
gi|29468343 - gi|29468343|gb|AAO85511.1| CSN8 [Nicotiana benthamiana]
303.0 [0..1] [197..1]

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Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF  60
   61 LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG YDWSQEAKDM VAAFSDLYTK 120
  121 RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV 180
  181 DSSKLQRLTE YVFHLEH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.045757
Match: 1rz4A
Description: Crystal Structure of Human eIF3k
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 2.1896012443261 bayes_pls_golite062009
binding 2.15024109065235 bayes_pls_golite062009
nucleic acid binding 2.10453342985083 bayes_pls_golite062009
DNA binding 2.09269818546884 bayes_pls_golite062009
transcription factor activity 1.30414036385056 bayes_pls_golite062009
sequence-specific DNA binding 0.17338630996898 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle