| Protein: | COP1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 675 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COP1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
509.0 | [0..6] | [672..393] |
|
|
481.0 | [0..13] | [674..390] |
|
|
461.0 | [0..171] | [673..972] |
|
Region A: Residues: [1-165] |
1 11 21 31 41 51
| | | | | |
1 MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK 60
61 DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP NFLLDKLLKK TSARHVSKTA 120
121 SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQ
|
| Detection Method: |  |
| Confidence: | 3.522879 |
| Match: | 2cklB |
| Description: | No description for 2cklB was found. |
|
Region A: Residues: [166-240] |
1 11 21 31 41 51
| | | | | |
1 ILLDFLHCLR KQKVDELNEV QTDLQYIKED INAVERHRID LYRARDRYSV KLRMLGDDPS 60
61 TRNAWPHEKN QIGFN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.672 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.672 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.624 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.624 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.483 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.482 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.468 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.468 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.430 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.278 | a.7.8 | GAT domain |
|
Region A: Residues: [241-675] |
1 11 21 31 41 51
| | | | | |
1 SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA 60
61 QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA 120
121 EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF SSVVNEPADM QCPIVEMSTR 180
181 SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV 240
241 SGSDDCKVKV WCTRQEASVI NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ 300
301 PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV 360
361 NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML 420
421 TANSQGTIKV LVLAA
|
| Detection Method: | |
| Confidence: | 64.69897 |
| Match: | 1p22A |
| Description: | F-box/WD-repeat protein 1 (beta-TRCP1) |
Matching Structure (courtesy of the PDB): |
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