YRC Public Data Repository - Protein Structure Prediction

Protein:	CAPP1_ARATH
Organism:	Arabidopsis thaliana
Length:	967 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAPP1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|7436543, gi\|2... - pir\|\|T09846 phosphoenolpyruvate carboxylase (EC 4.1.1.31) 1 - upland cotton, gi\|2266947\|gb\|AAB80714....	1321.0	[0..1]	[967..1]
gi\|45505269 - gi\|45505269\|gb\|AAS67006.1\| Phosphoenolpyruvate carboxylase [Glycine max]	1318.0	[0..1]	[967..1]
CAPP3_ARATH - Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis thaliana GN=PPC3 PE=2 SV=2	1315.0	[0..1]	[967..1]
gi\|92874670 - gi\|92874670\|gb\|ABE82904.1\| Phosphoenolpyruvate carboxylase [Medicago truncatula]	1310.0	[0..1]	[967..1]
CAPPC_FLATR - Phosphoenolpyruvate carboxylase 2 OS=Flaveria trinervia GN=PPCC PE=1 SV=1	1306.0	[0..1]	[967..1]
gi\|63053870 - gi\|63053870\|gb\|AAY28730.1\| phosphoenolpyruvate carboxylase [Alternanthera ficoidea]	1305.0	[0..1]	[967..1]
gi\|20162467 - gi\|20162467\|gb\|AAM14597.1\|AF494192_1 phosphoenolpyruvate carboxylase FPUB966 [Flaveria pubescens]	1304.0	[0..1]	[967..1]
CAPP_PICAB - Phosphoenolpyruvate carboxylase OS=Picea abies GN=PPC PE=2 SV=1	1304.0	[0..1]	[967..1]
gi\|20162465 - gi\|20162465\|gb\|AAM14596.1\|AF494191_1 phosphoenolpyruvate carboxylase FB966 [Flaveria brownii]	1303.0	[0..1]	[967..1]

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Predicted Domain #1

Region A:
Residues: [1-967]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRKLEKMA SIDVHLRQLV PGKVSEDDKL VEYDALLLDR FLDILQDLHG EDLRETVQEL  60
   61 YEHSAEYEGK HEPKKLEELG SVLTSLDPGD SIVIAKAFSH MLNLANLAEE VQIAYRRRIK 120
  121 KLKKGDFVDE SSATTESDLE ETFKKLVGDL NKSPEEIFDA LKNQTVDLVL TAHPTQSVRR 180
  181 SLLQKHGRIR DCLAQLYAKD ITPDDKQELD EALQREIQAA FRTDEIKRTP PTPQDEMRAG 240
  241 MSYFHETIWK GVPKFLRRVD TALKNIGIEE RVPYNAPLIQ FSSWMGGDRD GNPRVTPEVT 300
  301 RDVCLLARMM AATMYFNQIE DLMFEMSMWR CNDELRARAD EVHANSRKDA AKHYIEFWKS 360
  361 IPTTEPYRVI LGDVRDKLYH TRERAHQLLS NGHSDVPVEA TFINLEQFLE PLELCYRSLC 420
  421 SCGDRPIADG SLLDFLRQVS TFGLSLVRLD IRQESDRHTD VLDAITTHLD IGSYREWSEE 480
  481 RRQEWLLSEL SGKRPLFGSD LPKTEEIADV LDTFHVIAEL PADSFGAYII SMATAPSDVL 540
  541 AVELLQRECR VKQPLRVVPL FEKLADLEAA PAAVARLFSV DWYKNRINGK QEVMIGYSDS 600
  601 GKDAGRLSAA WQLYKAQEEL VKVAKEYGVK LTMFHGRGGT VGRGGGPTHL AILSQPPDTI 660
  661 NGSLRVTVQG EVIEQSFGEE HLCFRTLQRF TAATLEHGMR PPISPKPEWR ALLDEMAVVA 720
  721 TEEYRSVVFQ EPRFVEYFRL ATPELEYGRM NIGSRPSKRK PSGGIESLRA IPWIFAWTQT 780
  781 RFHLPVWLGF GSAIRHVIEK DVRNLHMLQD MYQHWPFFRV TIDLIEMVFA KGDPGIAALY 840
  841 DKLLVSEELW PFGEKLRANF EETKKLILQT AGHKDLLEGD PYLKQRLRLR DSYITTLNVC 900
  901 QAYTLKRIRD PSYHVTLRPH ISKEIAESSK PAKELIELNP TSEYAPGLED TLILTMKGIA 960
  961 AGLQNTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1jqoA
Description:	Phosphoenolpyruvate carboxylase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits