YRC Public Data Repository - Protein Structure Prediction

Protein:	CK5P1_ARATH
Organism:	Arabidopsis thaliana
Length:	640 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CK5P1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|28872782, gi\|... - gi\|56205141\|emb\|CAI19394.1\| CDK5 regulatory subunit associated protein 1 [Homo sapiens], gi\|29791797... gi\|208965952 - gi\|208965952\|dbj\|BAG72990.1\| CDK5 regulatory subunit associated protein 1 [synthetic construct]	481.0	[0..26]	[624..3]
gi\|76633250, gi\|... - gi\|76633250\|ref\|XP_872709.1\| PREDICTED: similar to CDK5 regulatory subunit associated protein 1 isof...	477.0	[0..26]	[628..3]
gi\|83281193 - gi\|83281193\|dbj\|BAD15110.2\| similar to CDK5 regulatory subunit-associated protein [Nicotiana tabacum...	468.0	[0..16]	[634..15]
gi\|67549025, gi\|... - gi\|67549025\|ref\|ZP_00426901.1\| Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme ...	468.0	[0..23]	[623..37]
CK5P1_MOUSE - CDK5 regulatory subunit-associated protein 1 OS=Mus musculus GN=Cdk5rap1 PE=2 SV=2	466.0	[0..26]	[624..3]
gi\|73992243 - gi\|73992243\|ref\|XP_534385.2\| PREDICTED: similar to CDK5 regulatory subunit associated protein 1 isof...	466.0	[0..26]	[624..3]

Back

Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSLSSLS SILSNPHGCS LCFKASTQRC FALRFLSSKA THASSSSSSA LLPRCRSSTH  60
   61 RLTQKPINRK KGFSLNLSRS FSISQIASSG KFDGPSLHQF VSNAQAHASL TTPETESEST 120
  121 LDSDIASK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRIYHETYGC QMNINDMEIV LAIMKNSGYK EVVTDPESAE VIFVNTCAIR ENAEQRVWQR  60
   61 LNYFWFLKRE WKVNAATGRA KSLKPPKVVV LGCMAERLKD KILDSDKMVD VVCGPDAYRD 120
  121 LPRLLEEVDY GQKGINTLLS LEETYADISP VRISE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.49485
Match:	PF00919.11
Description:	No description for PF00919.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [284-640]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSITAFVSVM RGCNNMCAFC IVPFTRGRER SRPVESIIRE VGELWESGVK EVTLLGQNVN  60
   61 SYNDDSADRE SGANWEYSEG FSSRCKVKNM GLRFADLLDR LSVEFPEMRF RFTSPHPKDY 120
  121 PDELLYLMRD RHNICNLIHL PAQSGNSRIL EQMRRGYTRE AYLDLVKKIR SIIPDVAITS 180
  181 DFITGFCGET EEEHQETLSL VRAVGYDMAY MFAYSMREKT HAHRNYTDDV PEEVKQRRLT 240
  241 ELIDAFRETT GPCYDSQVGS TQLVLVEGPN KRAPETELIG KTDKGHRVSF VTKPLFDKAC 300
  301 LLDGDDLKRN PGIGDFVEVQ IEKSTRASLF GEALAISKMS LFHDVGVVDA VVASCAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.221849
Match:	2qgqA
Description:	No description for 2qgqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits