YRC Public Data Repository - Protein Structure Prediction

Protein:	ATH1_ARATH
Organism:	Arabidopsis thaliana
Length:	473 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATH1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|15215913 - gi\|15215913\|emb\|CAC51426.1\| H1 gene [Arabidopsis thaliana]	351.0	[0..1]	[473..1]
gi\|3928843 - gi\|3928843\|gb\|AAC84001.1\| homeobox protein [Picea abies]	213.0	[0..100]	[450..38]
gi\|4099828 - gi\|4099828\|gb\|AAD00692.1\| homeobox transcription factor SKN2 [Picea mariana]	213.0	[0..100]	[450..46]
gi\|38490440 - gi\|38490440\|emb\|CAD57738.1\| extradenticle 2 [Cupiennius salei]	208.0	[0..109]	[451..1]
gi\|55669503 - gi\|55669503\|gb\|AAV54619.1\| homeobox transcription factor KN2 [Pinus taeda] gi\|55669503 - gb\|AAV54619.1\| homeobox transcription factor KN2 [Pinus taeda]	207.0	[0..100]	[450..38]
gi\|8096557 - gi\|8096557\|dbj\|BAA96136.1\| PBX1B [Gallus gallus]	200.0	[0..132]	[469..9]
gi\|109498930 - gi\|109498930\|ref\|XP_001072172.1\| PREDICTED: similar to pre B-cell leukemia transcription factor 1 is...	199.0	[0..132]	[469..9]
gi\|30584839 - gi\|30584839\|gb\|AAP36672.1\| Homo sapiens pre-B-cell leukemia transcription factor 1 [synthetic constr...	198.0	[0..132]	[469..9]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN  60
   61 SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH LRHYDDSSNN MWGFEANSEF 120
  121 QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE 180
  181 QASCSSKDIS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [191-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNVVTQGFSQ LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL  60
   61 DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS AFHAAT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	15.09691
Match:	PF07526.2
Description:	No description for PF07526.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [307-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELDPQLHTRF ALQTVSFLYK NLRERICKKI ISMGSVLERG KDKTQETSMF HQHCLLQQLK  60
   61 RKNHQIWRPQ RGLPEKSVSV LRNWMFQNFL HPYPKDSEKH LLAIRSGLTR SQVSNWFINA 120
  121 RVRLWKPMIE EMYAEMNKRK LNNSHIQPNG PTLRMPKSVM MSQAMHK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.522879
Match:	2d5vA
Description:	No description for 2d5vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits