YRC Public Data Repository - Protein Structure Prediction

Protein:	DNAA_BACSU
Organism:	Bacillus subtilis
Length:	446 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DNAA_BACSU.

Description	E-value	Query Range	Subject Range
gi\|229181735, gi... - gi\|229181735\|ref\|ZP_04309058.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus 1725... DNAA_BACC4 - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain B4264) GN=dnaA PE=3 SV=1 gi\|206970479, gi... - gi\|206970479\|ref\|ZP_03231432.1\| chromosomal replication initiator protein DnaA [Bacillus cereus AH11... DNAA_BACCR - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM ... gi\|228835452, gi... - gi\|228924234\|ref\|ZP_04087505.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|229051158, gi... - gi\|229051158\|ref\|ZP_04194702.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus AH67... gi\|229072954, gi... - gi\|229072954\|ref\|ZP_04206150.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus F651... gi\|228955739, gi... - gi\|228955739\|ref\|ZP_04117734.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|228797947, gi... - gi\|228961753\|ref\|ZP_04123356.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|228635464, gi... - gi\|229148039\|ref\|ZP_04276378.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD... gi\|228629834, gi... - gi\|229153648\|ref\|ZP_04281824.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus m155... gi\|229112902, gi... - gi\|229112902\|ref\|ZP_04242433.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock... gi\|229130735, gi... - gi\|229130735\|ref\|ZP_04259688.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD...	369.0	[0..1]	[446..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENILDLWNQ ALAQIEKKLS KPSFETWMKS TKAHSLQGDT LTITAPNEFA RDWLESRYLH  60
   61 LIADTIYELT GEELSIKFVI PQNQDVEDFM PKPQVKKAVK EDTSDFPQNM LN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1e32A
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.17018123476167	bayes_pls_golite062009
catalytic activity	0.767627914425245	bayes_pls_golite062009
protein binding	0.379408439982187	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [113-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKYTFDTFVI GSGNRFAHAA SLAVAEAPAK AYNPLFIYGG VGLGKTHLMH AIGHYVIDHN  60
   61 PSAKVVYLSS EKFTNEFINS IRDNKAVDFR NRYRNVDVLL IDDIQFLAGK EQTQEEFFHT 120
  121 FNTLHEESKQ IVISSDRPPK EIPTLEDRLR SRFEWGLITD ITPPDLETRI AILRKKAKAE 180
  181 GLDIPNEVML YIANQIDSNI RELEGALIRV VAYSSLINKD INADLAAEAL KDIIPSSKPK 240
  241 VITIKEIQRV VGQQFNIKLE DFKAKKRTKS VAFPRQIAMY LSREMTDSSL PKIGEEFGGR 300
  301 DHTTVIHAHE KISKLLADDE QLQQHVKEIK EQLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.30103
Match:	2hcbA
Description:	No description for 2hcbA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.7440092435568	bayes_pls_golite062009
pyrophosphatase activity	1.24473801560965	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
nucleic acid binding	0.835083234340837	bayes_pls_golite062009
DNA binding	0.482861189033644	bayes_pls_golite062009
transcription regulator activity	0.313784136616883	bayes_pls_golite062009
helicase activity	0.113520297233174	bayes_pls_golite062009
DNA-dependent ATPase activity	0.0863785441153608	bayes_pls_golite062009
nucleotide binding	0.0188404002299471	bayes_pls_golite062009
purine nucleotide binding	0.0142207617615038	bayes_pls_golite062009
purine ribonucleotide binding	0.00410396371520677	bayes_pls_golite062009
ribonucleotide binding	0.0038904924070306	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: