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View Structure Prediction Details

Protein: ALR1_BACSU
Organism: Bacillus subtilis
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALR1_BACSU.

Description E-value Query
Range
Subject
Range
gi|224732, gi|14... - pir||JS0443 alanine racemase (EC 5.1.1.1) - Bacillus subtilis, gi|224732|prf||1112147A Ala racemase...
354.0 [0..1] [389..1]

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Predicted Domain #1
Region A:
Residues: [1-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKPFYRDT WAEIDLSAIK ENVSNMKKHI GEHVHLMAVV KANAYGHGDA ETAKAALDAG  60
   61 ASCLAVAILD EAISLRKKGL KAPILVLGAV PPEYVAIAAE YDVTLTGYSV EWLQEAARHT 120
  121 KKGSLHFHLK VDTGMNRLGV KTEEEVQNVM AILDRNPRLK CKGVFTHFAT ADEKERGYFL 180
  181 MQFERFKELI APLPLKNLMV HCANSAAGLR LKKGFFNAVR FGIGMYGLRP SADMSDEIPF 240
  241 QLRPAFTLHS TLSHVKLIRK GESVSYGAEY TAEKDTWIGT VPVGYADGWL RKLKGTDILV 300
  301 KGKRLKIAGR ICMDQFMVEL DQEYPPGTKV TLIGRQGDEY ISMDEIAGRL ETINYEVACT 360
  361 ISSRVPRMFL ENGSIMEVRN PLLQVNISN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.0
Match: 1l6fA
Description: Alanine racemase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
alanine racemase activity 2.62362449847897 bayes_pls_golite062009
amino-acid racemase activity 2.31165775898309 bayes_pls_golite062009
racemase and epimerase activity, acting on amino acids and derivatives 2.17003836264776 bayes_pls_golite062009
catalytic activity 1.23611818854966 bayes_pls_golite062009
binding 0.911032619175149 bayes_pls_golite062009
diaminopimelate decarboxylase activity 0.492894938678183 bayes_pls_golite062009
racemase and epimerase activity 0.328743179708914 bayes_pls_golite062009
lyase activity 0.320782640542698 bayes_pls_golite062009
carboxy-lyase activity 0.14065879331273 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle