| Protein: | pab-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 583 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pab-1.
| Description | E-value | Query Range |
Subject Range |
|
|
473.0 | [0..2] | [583..44] |
|
Region A: Residues: [1-241] |
1 11 21 31 41 51
| | | | | |
1 MEMNVAAPAA AVAGAAAPQP ADAERAMDTM NFEALHGKPM RIMWSQRDPA MRRSGAGNIF 60
61 IKNLDKVIDN KSIYDTFSLF GNILSCKVAI DEDGFSKGYG FVHFETEEAA QNAIQKVNGM 120
121 LLAGKKVFVG KFQPRAQRNR ELGETAKQFT NVYVKNFGDH YNKETLEKLF AKFGNITSCE 180
181 VMTVEGKSKG FGFVAFANPE EAETAVQALH DSTIEGTDLK LHVCRAQKKS ERHAELKKKH 240
241 E
|
| Detection Method: |  |
| Confidence: | 42.30103 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 2.60920363363072 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.36691748240059 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [242-346] |
1 11 21 31 41 51
| | | | | |
1 QHKAERMQKY QGVNLYVKNL DETVDDDGLK KQFESYGNIT SAKVMTDENG RSKGFGFVCF 60
61 EKPEEATSAV TEMNSKMVCS KPLYVAIAQR KEDRRAQLAS QYMQR
|
| Detection Method: | |
| Confidence: | 5.1 |
| Match: | 2f3jA |
| Description: | No description for 2f3jA was found. |
|
Region A: Residues: [347-517] |
1 11 21 31 41 51
| | | | | |
1 LASMRMHGNV PGAAMYNPTQ PGPGYYVANP MQQQRNFAGG QQMVRPGGRW GMQNQYPVQN 60
61 QYMMAQGPGV YQNRMGRPQN QQGGPRGPPQ QYNQVAQGGV RMQGPPRTQN PGVQQQNVPR 120
121 PPQQQQQQRP APTGPKAPPQ PYQAYQQRPQ GIVIGGQEPL TSAMLAAAAP Q
|
| Detection Method: | |
| Confidence: | 5.154902 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [518-583] |
1 11 21 31 41 51
| | | | | |
1 EQKQLLGERI YALIEKLYPG HKDAGKITGM MLEIDNSELI MMLQDSELFR SKVDEAASVL 60
61 VSAQKQ
|
| Detection Method: | |
| Confidence: | 32.0 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
