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View Structure Prediction Details

Protein: xol-1
Organism: Caenorhabditis elegans
Length: 417 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for xol-1.

Description E-value Query
Range
Subject
Range
xol-1 - status:Partially_confirmed UniProt:Q23229 protein_id:AAQ91910.1
618.0 [0..1] [322..1]

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Predicted Domain #1
Region A:
Residues: [1-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVEANSERR VKILGIDRSE NSPVLTYMET EDDPNFRNSK LAAAPHTVHM MDSGFLAINR  60
   61 QCLVKGKAIL AREPKSSNEH MIDDLPKHAH DQHTLSILRD FIDQLKLHNV YEINFYDPLD 120
  121 SSGKLAVIPM LIALWKCMLA SETDICDQEV LKSIMNSVIA KFELQIPCKN AVIDATLSGS 180
  181 REEVHIIAED GSLENSNGTT EHFNKKHDLV FVKTDLHPED FTPQMFPSQA KAKLLRDAFN 240
  241 NEEDEDTFPD ILVPAYMTAH SKNRVRQEDY TCLEVEFDSQ VALEKLMNEH EQVEGFEVQQ 300
  301 GGILVALKKD SFFDDELIEK IAIAIATESR QSVSSVSFDL LKLGPGASLV TLANSRRFEP 360
  361 ECRVVLQIEV KPVSPGETSS EGISDEHHYE EYDEDDIMEE EEAPSARQDD TYDEDEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1mg7A
Description: Early switch protein XOL-1, N-terminal domain; Early switch protein XOL-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.49103392871198 bayes_pls_golite062009
transcription regulator activity 1.85018644815049 bayes_pls_golite062009
nucleic acid binding 1.75408506104351 bayes_pls_golite062009
DNA binding 1.43729250025929 bayes_pls_golite062009
deacetylase activity 1.2639956188508 bayes_pls_golite062009
catalytic activity 0.836142537655721 bayes_pls_golite062009
structural constituent of ribosome 0.490196380687208 bayes_pls_golite062009
mRNA binding 0.396503273803591 bayes_pls_golite062009
structural molecule activity 0.291495994536274 bayes_pls_golite062009
protein binding 0.0913090112555771 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle