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View Structure Prediction Details

Protein: CE35328
Organism: Caenorhabditis elegans
Length: 380 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35328.

Description E-value Query
Range
Subject
Range
gi|118344558, gi... - gi|55771082|dbj|BAD69801.1| cathepsin D1 [Takifugu rubripes], gi|118344558|ref|NP_001072052.1| cathe...
347.0 [0..1] [377..1]

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Predicted Domain #1
Region A:
Residues: [1-380]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKLTILLA LLVFCSAGQF SISLEKSVPL REQLIREGRE LARLQQLSTG NESIYDHFDE  60
   61 YYTVSVRIGT PAQHFEVALD TTSSNLWVFG VECKSQSCQG HRIREYNRTA SSTFIAGTSN 120
  121 FVLPFNDGDV SGDLGKDNIQ FAGSKIQNQD FGIGTDATRL SGVTFDGVLG LGWPATALNG 180
  181 TSTTMQNLLP QLDQPLFTTY FTKSSVHNGT VGGEITFGAI DTTHCQSQIN YVRLAYDSLW 240
  241 SYSIDGFSFG NYSRNQTDTA IPDTTSSYTG VPNLVLAEIV IATGAQYDWN HQAYTLPCSS 300
  301 TATLPDLVFT IGGNSYNVRA VEYVVNLNLP NGQCALSLFG TFSSPSGPLW VFGDNFLRSY 360
  361 CHIFDFGNSR IGLAKAIQNY 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.30103
Match: 2psgA
Description: REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aspartic-type endopeptidase activity 7.9145950161796 bayes_pls_golite062009
aspartic-type peptidase activity 7.9145950161796 bayes_pls_golite062009
peptidase activity 5.78181196721293 bayes_pls_golite062009
endopeptidase activity 5.4888481808613 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 5.39972232367526 bayes_pls_golite062009
hydrolase activity 4.34796304893506 bayes_pls_golite062009
catalytic activity 1.54514410489082 bayes_pls_golite062009
protein binding 1.24436201877985 bayes_pls_golite062009
binding 1.10054369202721 bayes_pls_golite062009
receptor binding 1.06854757360057 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle