| Protein: | CE34752 |
| Organism: | Caenorhabditis elegans |
| Length: | 597 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE34752.
| Description | E-value | Query Range |
Subject Range |
|
|
235.0 | [0..113] | [596..1] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MQGRGGYHHG FDGPKRYRRD DNADPTNPNP SIVVHVRNLH QKVTEADLLE ALSNFGPVAY 60
61 ATCIPHSRMA LVEFEDIEGA KACVNFATSN
|
| Detection Method: |  |
| Confidence: | 6.30103 |
| Match: | 1wexA |
| Description: | Solution structure of RRM domain in protein BAB28521 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| 4.67888641618755 | bayes_pls_golite062009 | |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| snRNA binding | 1.76821382294389 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.612226940931031 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [91-306] |
1 11 21 31 41 51
| | | | | |
1 QINVGGQGAL FNYSTSQCIE RMGFESATPN KVLVVTVLNA QYPIDADVIY QISNAQGKVL 60
61 RVAVMHKPTV VQALVEFESM EVAKAAKHAM NGADIYSGCC TLKVEFAKPD RVRVQRQDKD 120
121 QRDFTLPDNE SFQDTGRKTL IPAKPDDHYR RPYEDDRNHY DRHDYQAPSS YGYSSRGGGH 180
181 SDYYGGDRGG PPHPPPSRYR DDYEDRGYAQ PAGGGP
|
| Detection Method: | |
| Confidence: | 12.30103 |
| Match: | 1sjrA |
| Description: | NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| 4.67888641618755 | bayes_pls_golite062009 | |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| snRNA binding | 1.76821382294389 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.612226940931031 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [307-515] |
1 11 21 31 41 51
| | | | | |
1 GCVMMIYGLE HGKINCDMLF NILCQYGNVL RISFMRTKTE TGIIELGTPE ERQNVLDFLQ 60
61 GSALFGLTLE FKPSHQECVH HLRDPFLLPD GSPSFKDYSS SRNQRFSTPE LAAKNRIIFP 120
121 TNTLHWFNAP GTMDEQALLD LMAEKTEHKP VKIDIFPSRN ERSAAGTAEF ETVEIANEVL 180
181 ALVNHTPVNS PYGSAPFIVK WAYATPRRW
|
| Detection Method: | |
| Confidence: | 27.69897 |
| Match: | 1qm9A |
| Description: | Polypyrimidine tract-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| 4.67888641618755 | bayes_pls_golite062009 | |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| snRNA binding | 1.76821382294389 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.612226940931031 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [516-597] |
1 11 21 31 41 51
| | | | | |
1 DGSGGEPPRY EEGGDGERKE GFIQPAHRPS PSFRGRGRGY GDSGFRRESY RGGLHGSDRY 60
61 GPYPPRGGGF RGGRGRGRFD GY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
