| Protein: | rgef-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 654 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rgef-1.
| Description | E-value | Query Range |
Subject Range |
|
|
365.0 | [0..12] | [618..58] |
|
Region A: Residues: [1-420] |
1 11 21 31 41 51
| | | | | |
1 MSSKVEEDQH QELLTEDQLV ARCVECFDVD EEDEVEDIEF VDALFLSHQW LSDSLSLITH 60
61 FVNFYQETRN VEQREAVCRA VSFWIEKFPM HFDAQPQVCA QVVRLKTIAE DINENIRNGL 120
121 DVSALPSFAW LRAVSVRNPL AKQTAFSLSF VQASPSDIST SLSHIDYRVL SRISITELKQ 180
181 YVKDGHLRSC PMLERSISVF NNLSNWVQCM ILNKTTPKER AEILVKFVHV AKHLRKINNF 240
241 NTLMSVVGGI THSSVARLAK TYAVLSNDIK KELTQLTNLL SAQHNFCEYR KALGACNKKF 300
301 RIPIIGVHLK DLVAINCSGA NFEKTKCISS DKLVKLSKLL SNFLVFNQKG HNLPEMNMDL 360
361 INTLKVSLDI RYNDDDIYEL SLRREPKTFM NFEPSRGLVF AEWASGVTVA PDNATVSKHI 420
421
|
| Detection Method: |  |
| Confidence: | 67.522879 |
| Match: | 2ii0A |
| Description: | No description for 2ii0A was found. |
|
Region A: Residues: [421-654] |
1 11 21 31 41 51
| | | | | |
1 SAMVDAVFKH YDHDRDGFIS QEEFQLIAGN FPFIDAFVNI DVDMDGQISK DELKTYFMAA 60
61 NKNTKDLRRG FKHNFHETTF LTPTTCNHCN KLLWGILRQG FKCKDCGLAV HSCCKSNAVA 120
121 ECRRKSSSNL TRAAEWFASP RGSMRSRIIN TCKRSSRPRT VSAVVTSPTT EKPTCSTKLS 180
181 PPKLKDIRPQ SESTEYYNSG STPDEEIGLV SLACEEVFED DDLADISSAS YRTA
|
| Detection Method: | |
| Confidence: | 23.0 |
| Match: | 1xa6A |
| Description: | Crystal Structure of the Human Beta2-Chimaerin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| GTPase regulator activity | 2.70614727793157 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 2.68579854252375 | bayes_pls_golite062009 |
| binding | 2.15139804299723 | bayes_pls_golite062009 |
| guanyl-nucleotide exchange factor activity | 2.06038764955701 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.9750017471254 | bayes_pls_golite062009 |
| small GTPase regulator activity | 1.95738547986197 | bayes_pls_golite062009 |
| protein binding | 1.29100556128076 | bayes_pls_golite062009 |
| signal transducer activity | 1.25507073225414 | bayes_pls_golite062009 |
| molecular transducer activity | 1.25507073225414 | bayes_pls_golite062009 |
| Ras GTPase activator activity | 1.09070479183477 | bayes_pls_golite062009 |
| Ras guanyl-nucleotide exchange factor activity | 0.958295643211986 | bayes_pls_golite062009 |
| GTPase activator activity | 0.717730683557543 | bayes_pls_golite062009 |
| enzyme activator activity | 0.298334474872045 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0455432286632499 | bayes_pls_golite062009 |
