| Protein: | csn-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 501 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for csn-3.
| Description | E-value | Query Range |
Subject Range |
|
|
283.0 | [0..32] | [497..5] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MTTFFNKLFT GASSSSSAAA SSGMDLGSME SLCAAINELC SEKHVSENVG ELAAGIVRKN 60
61 KELFEKKSND VEAFLLHCSP NVGSAAMVAA IKGMFDTSAA KNNETGTDRA VELLNHYVDE 120
121 NN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [123-318] |
1 11 21 31 41 51
| | | | | |
1 FVGGHLKLVP EIIFPLLRDV GLYCLEKKNK PEIGQRIIMK ALGSMFPRNG SNAPNVLTSA 60
61 HGVLFACALE TKDYASVEPF IDLHVDEIAN ENCIQDQEKS DNRERDFGDV FLGRMKKGAA 120
121 FGSQPVAHNP HLHPKYVLDY LYNGACILIE LKRFEDALFL LEICVGMPAF SVQDQHLDSF 180
181 KKYVLISLIL KGKVDV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [319-501] |
1 11 21 31 41 51
| | | | | |
1 TENGDKSAIR HFKTKSPEYK QFSEIRFSRS SNTHSAVESL VKSAKDRLRK DGNTEIAKYL 60
61 VVEMKKKTIM SLTRMFTSIR ISEIEELAFL KSRDQVTELI GQLVEEQRIT VRIDGDMVFW 120
121 TELSPVPSKN DVENKIRIVD HLNTLLHEKN TTMKAGSGRM RPSVMYNEDE GLSMPPTESK 180
181 FFS
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.04123976602801 | bayes_pls_golite062009 |
| transcription regulator activity | 1.8189108757228 | bayes_pls_golite062009 |
| nucleic acid binding | 1.76517313697689 | bayes_pls_golite062009 |
| DNA binding | 1.64595632095392 | bayes_pls_golite062009 |
| transcription factor activity | 1.00475531374083 | bayes_pls_golite062009 |
| protein binding | 0.242608912344822 | bayes_pls_golite062009 |
