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View Structure Prediction Details

Protein: nas-1
Organism: Caenorhabditis elegans
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nas-1.

Description E-value Query
Range
Subject
Range
gi|47223677 - gi|47223677|emb|CAF99286.1| unnamed protein product [Tetraodon nigroviridis]
256.0 [0..2] [268..9]

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Predicted Domain #1
Region A:
Residues: [1-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPIVVSILL ATPLALCQAP FWMPNMQQFS FLTETDFRNA LLLPTTNTRR VRSLYHDMRI  60
   61 PFQRFKRGGG VAVAAEKDKW PNGRVPYILS AAYTSAQRAV LARAFDTYAK RTCIRFVPKS 120
  121 PADKDYIVIQ KLDGCYADFS RVGGRQQVSL ADECIDYATI IHELMHVIGF IHEHQREDRD 180
  181 SYVSILYQNV IQGANTDFDK LSNLGLSYYG EHYDYSSIMH YEANEGSRNG KNTIEAKNSH 240
  241 FTAIMGKASD FSTSDLRRVN RAYKCSIFAF 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.30103
Match: 1astA
Description: STRUCTURE OF ASTACIN AND IMPLICATIONS FOR ACTIVATION OF ASTACINS AND ZINC-LIGATION OF COLLAGENASES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 0.768926766837908 bayes_pls_golite062009
peptidase activity 0.551595728198696 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.378812143092016 bayes_pls_golite062009
metallopeptidase activity 0.297506457480643 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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