YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: asp-2
Organism: Caenorhabditis elegans
Length: 429 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for asp-2.

Description E-value Query
Range
Subject
Range
gi|28603726, gi|... - gi|6224887|gb|AAF05998.1|AF192332_1 pregnancy-associated glycoprotein-15 [Bos taurus], gi|28603726|r...
343.0 [0..1] [426..1]

Back

Predicted Domain #1
Region A:
Residues: [1-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNLFLLLAL VAAALAAVVQ VPLVKIEPYR NRLIREGRWV QYRKDREIRR FMMNKQSNDM  60
   61 SVGQYVNDYE DEAYVGNITI GTPQQQFKVI LDTGSSNLWI PDITCGTKPE NCSTVPACRG 120
  121 IICQFECDDQ ACCGAGANYT DSCFYQNKFD ASKSSSYKTN GRNFIIEYGT GSARGFLGQD 180
  181 TITFGGIGEP QLAVPNTVFG QATSLAAFFE GQPLDGILGL AFKSIAVDQI TPPFINAINQ 240
  241 NLVDLPLFTV FLEHEGDQNG VQGGVYTYGG IDTKNCGPVI AYQPLSSATY YQFKMSAIGS 300
  301 GSYHSSKGWQ VISDTGTSLI GGPKAYVSAI ADAVGATWRD DYGVYILPCS AKINTLDITI 360
  361 GNQVYNIDSS NTIIPLGDGS NNCIYAIFPF SSGGFGPSWI LGDPFIRQYC NIYDVGTQRV 420
  421 GFAKSLQSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.0
Match: 2psgA
Description: REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aspartic-type endopeptidase activity 7.9145950161796 bayes_pls_golite062009
aspartic-type peptidase activity 7.9145950161796 bayes_pls_golite062009
peptidase activity 5.78181196721293 bayes_pls_golite062009
endopeptidase activity 5.4888481808613 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 5.39972232367526 bayes_pls_golite062009
hydrolase activity 4.34796304893506 bayes_pls_golite062009
catalytic activity 1.54514410489082 bayes_pls_golite062009
protein binding 1.24436201877985 bayes_pls_golite062009
binding 1.10054369202721 bayes_pls_golite062009
receptor binding 1.06854757360057 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle