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View Structure Prediction Details

Protein: pnk-1
Organism: Caenorhabditis elegans
Length: 403 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pnk-1.

Description E-value Query
Range
Subject
Range
pnk-1 - status:Confirmed UniProt:P91029 protein_id:AAB42246.2
552.0 [0..1] [403..47]

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Predicted Domain #1
Region A:
Residues: [1-403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDLLLSSKL KRVDSATGSV SPRVCAADAL PTTTPAASTA LRQTQKAPKT PYVILPASDT  60
   61 FEKFRKTSRV SVDIGGTLIK VVYSSVMDEE LPEESLNGHT RKYAYEDGKR VLVNFKKFTD 120
  121 MDRFINFLKE VWTDRKRGDV IHCTGGGSYK YSEIIMKELG VRLQRTDEMR SLIFGVNFLL 180
  181 STNVDESFTY HHDAIGRNKF QYRPIAADLI YPFLLVNIGT GISILKVDSP TSYERVGGSS 240
  241 MGGGTFMGLG SLLTPAQNFD ELLEMANRGD HRNVDKLVCD IYGGAYDELG LKADLIAGSM 300
  301 AKCNRFEETT KKQQHKPEDI AKSLLLMVSN NIGQMAYLYG TRYNLKRIYF GGYFIRQDPI 360
  361 TMRTLSFAIN YWSKGEIEAL YLKHEGYLGA MGSFLDEDGK LDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 126.0
Match: 2i7nA
Description: No description for 2i7nA was found.

Predicted functions:

Term Confidence Notes
structural constituent of cytoskeleton 2.46121037473545 bayes_pls_golite062009
cytoskeletal protein binding 2.20983242331685 bayes_pls_golite062009
binding 1.92007657015464 bayes_pls_golite062009
pantothenate kinase activity 1.12808997366738 bayes_pls_golite062009
actin binding 1.03829083423378 bayes_pls_golite062009
structural molecule activity 0.963253603902027 bayes_pls_golite062009
hydrolase activity 0.921698825968978 bayes_pls_golite062009
protein binding 0.856838411407636 bayes_pls_golite062009
kinase activity 0.436497417645497 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.342031925172053 bayes_pls_golite062009
carbohydrate kinase activity 0.322729811262666 bayes_pls_golite062009
myosin binding 0.31501932970343 bayes_pls_golite062009
catalytic activity 0.296484721581333 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.267232202923286 bayes_pls_golite062009
transcription regulator activity 0.145473164813666 bayes_pls_golite062009
nucleic acid binding 0.101675282305395 bayes_pls_golite062009
unfolded protein binding 0.0304569608189402 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle