| Protein: | amt-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 687 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for amt-3.
| Description | E-value | Query Range |
Subject Range |
|
|
439.0 | [0..1] | [451..50] |
|
Region A: Residues: [1-464] |
1 11 21 31 41 51
| | | | | |
1 MAGPEGSIFN ASAMQIVQIH HYAEGSVTPE VDKLYQDDAV WIISSSFIIF TMHSGFGLLE 60
61 SGSVSAKDEV NIMVKNVVDV VFGGLSYWSC GFGFSYGDIP EWRNPYVGFG KFFYDPTRDY 120
121 GTRETINQEG WSYASFLFQL SLATTASTIV SGAVAERAKL KSYILLGCIV ILIQALPAHW 180
181 VWDKEGVFYK KGVVDFAGCS AVHLVGGIIG LIATVFLKPR RNRFNEDSVH QMSSPTNALL 240
241 GTFLLWWGWF GINAGSVWGI TGGRWRLGAR AAVATIMASI GGGATAITIS FVKTKKLQVN 300
301 FLINGILSSI VSITAICAVS RPWHALVIGS ISSVFSIAVL PLLDRLHIDD PVGIVPIHLT 360
361 SSIWGMIAVG IFCEEDKYLG SATNNRSGLL YSWSFELLWV QLQCTAAILI YSATTGFLAL 420
421 FLISKSPLGL RVTDYEEQIG ADVIEHGLAG TNVARYVLEK PLST
|
| Detection Method: |  |
| Confidence: | 116.0 |
| Match: | 1xqeA |
| Description: | The mechanism of ammonia transport based on the crystal structure of AmtB of E. coli. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [465-529] |
1 11 21 31 41 51
| | | | | |
1 RTFQTVTKAI TKWKMLAKKK SRQKRMEAAK LKRQEEQETF TNGTAIANGN GNVLHHRTNA 60
61 TESNG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [530-687] |
1 11 21 31 41 51
| | | | | |
1 TGAPKRSNGP AFNNQITPLA VSSTVSTARN GPSTGRRTES TAIEIEQPIE AVPPEVVAAA 60
61 VLPPEERPGP STNSNVSIEA SVEKSPSSST SRRSISIRSS PSIHTVSAIS TAAPDSRPST 120
121 ASATSIISKK SSKNSTVGKF VKAPAPRALS PPDNNPPV
|
| Detection Method: | |
| Confidence: | 1.22 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
