| Protein: | egl-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 223 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for egl-5.
| Description | E-value | Query Range |
Subject Range |
|
|
134.0 | [0..87] | [175..1] |
|
Region A: Residues: [1-107] |
1 11 21 31 41 51
| | | | | |
1 MNTSTSAFDF GSSTASSAAT STTSSQPDAN DHLSRLAAMT QGVGKEDPET SSTPSTEASL 60
61 YPGISAAYMQ SYGWPQNYNY FGQPLGPATF PGWPQCYPNT AWPNYGE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [108-223] |
1 11 21 31 41 51
| | | | | |
1 LFASSKKGRQ TYQRYQTSVL EAKFQQSSYV SKKQREELRL QTQLTDRQIK IWFQNRRMKA 60
61 KKEKQRVDDH TEHTPLLPAN PPKGMGMDMD DEKKWQMAHW PPAAAHNPYQ YPLCPP
|
| Detection Method: | |
| Confidence: | 25.522879 |
| Match: | 1b8iA |
| Description: | Ultrabithorax (ubx) homeodomain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.57523737355937 | bayes_pls_golite062009 |
| DNA binding | 3.00143272905695 | bayes_pls_golite062009 |
| nucleic acid binding | 2.89825020286436 | bayes_pls_golite062009 |
| transcription factor activity | 2.53664874743748 | bayes_pls_golite062009 |
| transcription repressor activity | 1.84054423341798 | bayes_pls_golite062009 |
| binding | 1.68817361068715 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.14821760889085 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.46503550280898 | bayes_pls_golite062009 |
| protein binding | 0.111941607625758 | bayes_pls_golite062009 |
