YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: acl-7
Organism: Caenorhabditis elegans
Length: 671 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acl-7.

Description E-value Query
Range
Subject
Range
gi|84394327, gi|... - gi|84394327|ref|ZP_00993050.1| glycerol-3-phosphate acyltransferase [Vibrio splendidus 12B01], gi|84...
491.0 [0..4] [670..164]

Back

Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSASQTGRQ INYPEYENFL EHLKNKGGPF KFVTATKNFP VGSKVGTAPK TRSLAEIRKS  60
   61 VLESPRVKSV ISEETLRRKC SPDLVRKEAE EILDEMSHTF NLYNVR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFGYAVCKAM EKLYDGIYVN EKKLLEIRER SKKDCVIFMP SHKTYFDFLL LSLICFQYDI  60
   61 QLPAIAAGQD FMSMKFMAGV LRRSGAFFMR RSFGTDQLYW AVFSEYVQTH VVNNDRTVEF 120
  121 FVEATRSRVG KSLHPKYGML QMVLEPYLRG SVYDIVIVPV SMNYDKILEE KLYAYELLGF 180
  181 PKPKESTGAL LKAREMLKIT HGSCFLTFGE PISVRDHFGV SLHRNTFVCQ PDSQFV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.0
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [343-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDAQAKLEIK RFAHRVVGIH NQNAVITVWS VACMAILQTF DRDDQAIITY CGLYTDVNNL  60
   61 IILQNHLGTV VNI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [416-547]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGNLDKNLRY YLTMHADLFE PFEGSAPDFQ LKFIAFPVAH QKQDVPIKIM ERAVSRLILT  60
   61 TYSNGMVHAV DSEGIICTIL RNSGITDVAK VKEEFCWLHF LMKREFVTVP GELPQLFDAT 120
  121 LDILRASEIL QF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [548-671]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDDNKIEILD EKNAEVLSKL VLPYFYNFEI AFNVFSEKKP MVSSLSEMVG TVQKNISEAY  60
   61 QDRLPNIRLS FLSTEPIKNA FAALTDFGVF ENSNTGMRPN FGKLHQIKNR LQRFTQSENH 120
  121 LAKL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle