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View Structure Prediction Details

Protein: acl-7
Organism: Caenorhabditis elegans
Length: 671 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acl-7.

Description E-value Query
Range
Subject
Range
gi|84394327, gi|... - gi|84394327|ref|ZP_00993050.1| glycerol-3-phosphate acyltransferase [Vibrio splendidus 12B01], gi|84...
491.0 [0..4] [670..164]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSASQTGRQ INYPEYENFL EHLKNKGGPF KFVTATKNFP VGSKVGTAPK TRSLAEIRKS  60
   61 VLESPRVKSV ISEETLRRKC SPDLVRKEAE EILDEMSHTF NLYNVR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFGYAVCKAM EKLYDGIYVN EKKLLEIRER SKKDCVIFMP SHKTYFDFLL LSLICFQYDI  60
   61 QLPAIAAGQD FMSMKFMAGV LRRSGAFFMR RSFGTDQLYW AVFSEYVQTH VVNNDRTVEF 120
  121 FVEATRSRVG KSLHPKYGML QMVLEPYLRG SVYDIVIVPV SMNYDKILEE KLYAYELLGF 180
  181 PKPKESTGAL LKAREMLKIT HGSCFLTFGE PISVRDHFGV SLHRNTFVCQ PDSQFV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.0
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [343-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDAQAKLEIK RFAHRVVGIH NQNAVITVWS VACMAILQTF DRDDQAIITY CGLYTDVNNL  60
   61 IILQNHLGTV VNI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [416-547]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGNLDKNLRY YLTMHADLFE PFEGSAPDFQ LKFIAFPVAH QKQDVPIKIM ERAVSRLILT  60
   61 TYSNGMVHAV DSEGIICTIL RNSGITDVAK VKEEFCWLHF LMKREFVTVP GELPQLFDAT 120
  121 LDILRASEIL QF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [548-671]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDDNKIEILD EKNAEVLSKL VLPYFYNFEI AFNVFSEKKP MVSSLSEMVG TVQKNISEAY  60
   61 QDRLPNIRLS FLSTEPIKNA FAALTDFGVF ENSNTGMRPN FGKLHQIKNR LQRFTQSENH 120
  121 LAKL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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