| Protein: | hif-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 503 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hif-1.
| Description | E-value | Query Range |
Subject Range |
|
|
228.0 | [0..13] | [503..333] |
|
Region A: Residues: [1-137] |
1 11 21 31 41 51
| | | | | |
1 MSRDSEYLDR KYTESPMGAF TTRHTCDMRI TFVSDKFNYI LKSELKTLMG TSFYELVHPA 60
61 DMMIVSKSMK ELFAKGHIRT PYYRLIAAND TLAWIQTEAT TITHTTKGQK GQYVICVHYV 120
121 LGIQGAEESL VVCTDSM
|
| Detection Method: |  |
| Confidence: | 36.0 |
| Match: | 1p97A |
| Description: | NMR structure of the C-terminal PAS domain of HIF2a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.438711522487185 | bayes_pls_golite062009 |
|
Region A: Residues: [138-371] |
1 11 21 31 41 51
| | | | | |
1 PAGMQVDIKK EVDDTRDYIG RQPEIVECVD FTPLIEPEDP FDTVIEPVVG GEEPVKQADM 60
61 GARKNSYDDV LQWLFRDQPS SPPPARYRSA DRFRTTEPSN FGSALASPDF MDSSSRTSRP 120
121 KTSYGRRAQS QGSRTTGSSS TSASATLPHS ANYSPLAEGI SQCGLNSPPS IKSGQVVYGD 180
181 ARSMGRSCDP SDSSRRFSAL SPSDTLNVSS TRGINPVIGS NDVFSTMPFA DSIA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [372-503] |
1 11 21 31 41 51
| | | | | |
1 IAERIDSSPT LTSGEPILCD DLQWEEPDLS CLAPFVDTYD MMQMDEGLPP ELQALYDLPD 60
61 FTPAVPQAPA ARPVHIDRSP PAKRMHQSGP SDLDFMYTQH YQPFQQDETY WQGQQQQNEQ 120
121 QPSSYSPFPM LS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
