| Protein: | lgc-33 |
| Organism: | Caenorhabditis elegans |
| Length: | 444 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgc-33.
| Description | E-value | Query Range |
Subject Range |
|
|
278.0 | [0..20] | [416..86] |
|
Region A: Residues: [1-308] |
1 11 21 31 41 51
| | | | | |
1 MVASKKIGMM AFTKLACLLL LFYQFSLVSS ISQNELNELS RKFKYYHSAV RPAAPDNFVS 60
61 DRNGTFFNIP VEIHLLATRI VNRNLYLEVI IVMTWIDERL RLRELQDRFS MPSEYPPWHP 120
121 SLVFAPPVTS KYTTLAPTSG TVNSYNTIKT TVECQTNAWK YPFESFTCTL SVGPEGDETL 180
181 TVAQFHDLRS HTQKLLTNVF LGDYPTCSLE FIFKSEWPRA LLSSFLPSIL IVSSVFFAQW 240
241 KRRKIQILVS LAAMLCSQRP YTSTTLMDLW LCANFIHSVF LVFVDLTLPA RRVRYTLMVH 300
301 VDEEKKQA
|
| Detection Method: |  |
| Confidence: | 48.522879 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [309-444] |
1 11 21 31 41 51
| | | | | |
1 NPVKIMTSGR FFGCSSASFE FIKKLSTNKL CTIKFHTISG NLHSVSLRLS SSHTIYLADT 60
61 EHSGPLRYVN HVIDYLMKKE HKPRTTIVTA CPGPTPIQRQ ITTAMLGNRK RAALFCIFLS 120
121 YLTFLLIYAI IVIVID
|
| Detection Method: | |
| Confidence: | 21.39794 |
| Match: | 1oedB |
| Description: | Acetylcholine receptor protein, beta chain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 0.8634160537398 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.85769987951557 | bayes_pls_golite062009 |
| channel activity | 0.82494017759356 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.82494017759356 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.699135829541381 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.69403270260693 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.68865958955334 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.67623695447613 | bayes_pls_golite062009 |
| ion channel activity | 0.675765443996379 | bayes_pls_golite062009 |
| gated channel activity | 0.60374435462213 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 0.60262355448371 | bayes_pls_golite062009 |
| ligand-gated channel activity | 0.60262355448371 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.544647628998121 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 0.537135922480839 | bayes_pls_golite062009 |
| cation channel activity | 0.53391585932077 | bayes_pls_golite062009 |
| excitatory extracellular ligand-gated ion channel activity | 0.463355765957441 | bayes_pls_golite062009 |
| extracellular ligand-gated ion channel activity | 0.463355765957441 | bayes_pls_golite062009 |
| nicotinic acetylcholine-activated cation-selective channel activity | 0.26375810963714 | bayes_pls_golite062009 |
| binding | 0.227765742225932 | bayes_pls_golite062009 |
