| Protein: | ptb-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 615 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ptb-1.
| Description | E-value | Query Range |
Subject Range |
|
|
319.0 | [0..63] | [615..390] |
|
Region A: Residues: [1-114] |
1 11 21 31 41 51
| | | | | |
1 MTKRGPDDLQ LSLRNGVGGA STTAPGVAAA AYYANVMTAD SEPKKAKLDP TLYSSQFYTP 60
61 AMHHGLMTAD ASTVAAVTAA ANATTAQLLT GNPITQIQGI QLSTLPQCNS TSAV
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [115-219] |
1 11 21 31 41 51
| | | | | |
1 TSIPVSKVVH VRNIPPDLVD VELMQLCIQY GPVSNYMMLK GKSQAFVEYE EEASAAAFVS 60
61 GMTAVPIQIR GRTLFAQYST HRELKFDKNK AISDTESVAN GSVSN
|
| Detection Method: | |
| Confidence: | 16.09691 |
| Match: | 2cq1A |
| Description: | solution structure of RNA binding domain in PTB-like protein L |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [220-417] |
1 11 21 31 41 51
| | | | | |
1 FEVGTQQQPN SVLRTIIENM MFPVSLDVLY QLFTRYGKVL RIITFNKNNT FQALVQMSEA 60
61 NSAQLAKQGL ENQNVYNGCC TLRIDYSKLS TLNVKYNNDK SRDYTNPNLP AGEMTLEQTI 120
121 AMSIPGLQNL IPANPYNFAF GANPATTFLT TQLAASTAAA AAVNDSANAA ALAPYLNPLG 180
181 LTSANLAPSI SSMRFPMI
|
| Detection Method: | |
| Confidence: | 17.0 |
| Match: | 2adbA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD2 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [418-615] |
1 11 21 31 41 51
| | | | | |
1 NLTPVILVSN LHEMKVTTDA LFTLFGVYGD VMRVKILYNK KDNALIQYSE PQQAQLALTH 60
61 LDKVKWHDRL IRVAPSKHTN VQMPKEGQPD AGLTRDYAHS TLHRFKKPGS KNYLNIYPPC 120
121 ATLHLSNIPT SVSEEKLKEM FAEAGFAVKA FKFFPKDHKM ALCQLEDIET AIDALIAMHN 180
181 HKLAENAHLR VSFSKSGI
|
| Detection Method: | |
| Confidence: | 41.0 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 2.83802439076672 | bayes_pls_golite062009 | |
| poly-pyrimidine tract binding | 1.69629099229571 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| snRNA binding | 0.249682711188639 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
