| Protein: | nhr-46 |
| Organism: | Caenorhabditis elegans |
| Length: | 395 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-46.
| Description | E-value | Query Range |
Subject Range |
|
|
234.0 | [0..49] | [395..206] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MCSADNHCDI TNESRNRCRA CRLRNCLEGG MNPKHVREER SKIERMPGNT CTVSAANGVS 60
61 HSSSAASASP EHKFSFSLST IAPSTSTG
|
| Detection Method: |  |
| Confidence: | 5.09691 |
| Match: | 2a66A |
| Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [89-395] |
1 11 21 31 41 51
| | | | | |
1 SFSSGSQPAP IESTNSSGSE AEVLDRKLIQ ENQLTLFMVA LEKQTEQLTD DDVKDNDVMG 60
61 AWSRDITLTF GLQHPQMVIK RLPLKYSCDR IMEAADLYLS WYRSFVFAAD WAMGIPEFRV 120
121 LPLADQTTLF KQNFMAFGWI TFAYKCFELK QHLTGMPLGN GAYIPYNDED QKKLPERWAQ 180
181 TYGVVCRKLI DLIVKAMIEL QITEEEYCLI KTISLFQQDC ILSEAGQGIC SRMRDRLLDA 240
241 LSAHIEKRYP YHTTSQRMTR ALKISLMLPS FSHIGQVEST LITQLTAADL HQLSGVPMEI 300
301 CTAQTTL
|
| Detection Method: | |
| Confidence: | 53.045757 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.15996699473685 | bayes_pls_golite062009 |
| transcription regulator activity | 0.46162010671465 | bayes_pls_golite062009 |
| protein binding | 0.33427459029264 | bayes_pls_golite062009 |
| nucleic acid binding | 0.15459949087509 | bayes_pls_golite062009 |
| DNA binding | 0.14395376162921 | bayes_pls_golite062009 |
