| Protein: | nhr-46 |
| Organism: | Caenorhabditis elegans |
| Length: | 576 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-46.
| Description | E-value | Query Range |
Subject Range |
|
|
287.0 | [0..24] | [572..2] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MELFRSPPQT AMFPTTASSS FVSAALHQQQ SSPSSNLPVI PSPTDMITVT STSPIPITTS 60
61 ASPPNLPMFL SFPSTSTTTS ILMDTVLAAQ KLNQQQNQQA FNFMVVKQEN GETGRNFMTM 120
121 KQDALQAITN TVSRNSPP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [139-261] |
1 11 21 31 41 51
| | | | | |
1 NVIKGERCVG CGSESAIRVH YGASSCHGCK AFFRRSVFEG RVYMCSADNH CDITNESRNR 60
61 CRACRLRNCL EGGMNPKHVR EERSKIERMP GNTCTVSAAN GVSHSSSAAS ASPEHKFSFS 120
121 LST
|
| Detection Method: | |
| Confidence: | 18.0 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| binding | 0.270879137859077 | bayes_pls_golite062009 |
|
Region A: Residues: [262-576] |
1 11 21 31 41 51
| | | | | |
1 IAPSTSTGSF SSGSQPAPIE STNSSGSEAE VLDRKLIQEN QLTLFMVALE KQTEQLTDDD 60
61 VKDNDVMGAW SRDITLTFGL QHPQMVIKRL PLKYSCDRIM EAADLYLSWY RSFVFAADWA 120
121 MGIPEFRVLP LADQTTLFKQ NFMAFGWITF AYKCFELKQH LTGMPLGNGA YIPYNDEDQK 180
181 KLPERWAQTY GVVCRKLIDL IVKAMIELQI TEEEYCLIKT ISLFQQDCIL SEAGQGICSR 240
241 MRDRLLDALS AHIEKRYPYH TTSQRMTRAL KISLMLPSFS HIGQVESTLI TQLTAADLHQ 300
301 LSGVPMEICT AQTTL
|
| Detection Method: | |
| Confidence: | 56.522879 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.15996699473685 | bayes_pls_golite062009 |
| transcription regulator activity | 0.46162010671465 | bayes_pls_golite062009 |
| protein binding | 0.33427459029264 | bayes_pls_golite062009 |
| nucleic acid binding | 0.15459949087509 | bayes_pls_golite062009 |
| DNA binding | 0.14395376162921 | bayes_pls_golite062009 |
