| Protein: | nob-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 218 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nob-1.
| Description | E-value | Query Range |
Subject Range |
|
|
136.0 | [0..2] | [204..1] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MISVMQQMIN NDSPEDSKES ITSVQQTPFF WPSAAAAIPS IQGESRSERE SETGSSPQLA 60
61 PSSTGMVMPG TAGMYGFGPS RMPTANEFGM MMNPVYTDFY QNPLASTDIT IPTTAGSSAA 120
121 TTPNAAMHLP WAISH
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [136-218] |
1 11 21 31 41 51
| | | | | |
1 DGKKKRQPYK KDQISRLEYE YSVNQYLTNK RRSELSAQLM LDEKQVKVWF QNRRMKDKKL 60
61 RQRHSGPFPH GAPVTPCIER LIN
|
| Detection Method: | |
| Confidence: | 29.39794 |
| Match: | 1homA |
| Description: | DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 1.62959077995642 | bayes_pls_golite062009 |
| binding | 1.48969201384255 | bayes_pls_golite062009 |
| DNA binding | 1.2137926921894 | bayes_pls_golite062009 |
| nucleic acid binding | 1.02805703044131 | bayes_pls_golite062009 |
| transcription factor activity | 0.89626527070971 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.06790788268651 | bayes_pls_golite062009 |
| protein binding | 0.012115247005138 | bayes_pls_golite062009 |
