| Protein: | nob-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 233 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nob-1.
| Description | E-value | Query Range |
Subject Range |
|
|
138.0 | [0..2] | [222..217] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MISVMQQMIN NDSPEDSKES ITSVQQTPFF WPSAAAAIPS IQGESRSERE SETGSSPQLA 60
61 PSSTGMVMPG TAGMYGFGPS RMPTANEFGM MMNPVYTDFY QNPLASTGWY SYGQPYQFTA 120
121 NYSIPSLDGN LSDITIPTTA GS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [143-233] |
1 11 21 31 41 51
| | | | | |
1 SAATTPNAAM HLPWAISHDG KKKRQPYKKD QISRLEYEYS VNQYLTNKRR SELSAQLMLD 60
61 EKQVKVWFQV CYRQYSAESL EIINVNFYLM S
|
| Detection Method: | |
| Confidence: | 28.0 |
| Match: | 1pufA |
| Description: | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 1.62959077995642 | bayes_pls_golite062009 |
| binding | 1.48969201384255 | bayes_pls_golite062009 |
| DNA binding | 1.2137926921894 | bayes_pls_golite062009 |
| nucleic acid binding | 1.02805703044131 | bayes_pls_golite062009 |
| transcription factor activity | 0.89626527070971 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.06790788268651 | bayes_pls_golite062009 |
| protein binding | 0.012115247005138 | bayes_pls_golite062009 |
