| Protein: | ceh-13 |
| Organism: | Caenorhabditis elegans |
| Length: | 202 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ceh-13.
| Description | E-value | Query Range |
Subject Range |
|
|
132.0 | [0..89] | [177..1] |
|
Region A: Residues: [1-91] |
1 11 21 31 41 51
| | | | | |
1 MSSTECYGAP PHNYYQDWPT THSYYPSVPS SYSPLNHHPA DIWAAHPSNY IMGNGHVSPP 60
61 ATASGLSPPA SRSSNSSAEL PTGVTASQHN T
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [92-202] |
1 11 21 31 41 51
| | | | | |
1 YKWMHTKRSQ RPAAPKKKVI DENGTNRTNF TTHQLTELEK EFHTAKYVNR TRRTEIASNL 60
61 KLQEAQVKIW FQNRRMKEKK REKEKAFLAR NTWESNSPTS SCSGEDVKNF K
|
| Detection Method: | |
| Confidence: | 23.522879 |
| Match: | 1b72A |
| Description: | Homeobox protein hox-b1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.57523737355937 | bayes_pls_golite062009 |
| DNA binding | 3.00143272905695 | bayes_pls_golite062009 |
| nucleic acid binding | 2.59326507566467 | bayes_pls_golite062009 |
| transcription factor activity | 2.53664874743748 | bayes_pls_golite062009 |
| binding | 1.68817361068715 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.46503550280898 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.24108783215685 | bayes_pls_golite062009 |
| transcription repressor activity | 0.20862059645422 | bayes_pls_golite062009 |
| protein binding | 0.111941607625758 | bayes_pls_golite062009 |
