| Protein: | tdc-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 705 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tdc-1.
| Description | E-value | Query Range |
Subject Range |
|
|
585.0 | [0..1] | [705..1] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MVYGLGEALK NLNSYCQERT TRIRNSLSPS RPSMSEATAT GSSSSSRAST TIPSTPNMDV 60
61 TPTVEDPRQN DNNASGMTRD EFRQYGKETV DYIVDYLENI QKRRVVPAIE PGYLKDLIPS 120
121 E
|
| Detection Method: |  |
| Confidence: | 109.0 |
| Match: | 1js3A |
| Description: | DOPA decarboxylase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [122-591] |
1 11 21 31 41 51
| | | | | |
1 APNTPESFES VMEDFEKLIM PGITHWQHPR FHAYFPAGNS FPSIIADMLS DAIGCVGFSW 60
61 AACPAMTELE LIMLDWFGKM IGLPAEFLPL TENGKGGGVI QSSASECNFV TLLAARFEVM 120
121 KELRQRFPFV EEGLLLSKLI AYCSKEAHSS VEKACMIGMV KLRILETDSK FRLRGDTLRN 180
181 AIQEDRNLGL IPFFVSTTLG TTSCCSFDVL SEIGPICKEN ELWLHVDAAY SGSAFICPEF 240
241 RPLMNGIEYA MSFNTNPNKW LLINFDCSTM WVRDRFKLTQ ALVVDPLYLQ HSWMDKSIDY 300
301 RHWGIPLSRR FRSLKLWFVI RMYGIDGLQK YIREHVRLAK KMETLLRADA KFEIVNEVIM 360
361 GLVCFRMKGD DELNQTLLTR LNASGRIHMV PASLGDRFVI RFCVCAENAT DKDIEVAYEI 420
421 IAQATQHVLH DSVKAVIAEE DEEAVALEEM VADLNITETP EKCLTRQNSA
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 1cj0A |
| Description: | Serine hydroxymethyltransferase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 4-aminobutyrate transaminase activity | 2.49533238079952 | bayes_pls_golite062009 |
| catalytic activity | 2.29878871754893 | bayes_pls_golite062009 |
| transferase activity, transferring nitrogenous groups | 1.28316822767388 | bayes_pls_golite062009 |
| transaminase activity | 1.24990480711889 | bayes_pls_golite062009 |
| 5-aminolevulinate synthase activity | 1.01853440922526 | bayes_pls_golite062009 |
| transferase activity | 0.737426388870721 | bayes_pls_golite062009 |
| succinate-semialdehyde dehydrogenase binding | 0.408430609033885 | bayes_pls_golite062009 |
| binding | 0.252160165096264 | bayes_pls_golite062009 |
| L-aspartate:2-oxoglutarate aminotransferase activity | 0.130698724135981 | bayes_pls_golite062009 |
| carbon-carbon lyase activity | 0.11598778799668 | bayes_pls_golite062009 |
| aromatic-L-amino-acid decarboxylase activity | 0.10589462882093 | bayes_pls_golite062009 |
|
Region A: Residues: [592-705] |
1 11 21 31 41 51
| | | | | |
1 NAAESGQKLE RQLSKEEILA QKQHESLAKK RSFLVRMVSD PKCYNPKIVR HLNMANHRKM 60
61 SQDLYRDRTL MQTISHSQRP NRLSQSPGSA GSAFFDDDDD RIVADVQTGL QTPI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
