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View Structure Prediction Details

Protein: vhp-1
Organism: Caenorhabditis elegans
Length: 606 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vhp-1.

Description E-value Query
Range
Subject
Range
vhp-1 - protein tyrosine phosphatase status:Confirmed UniProt:Q10038 protein_id:AAK68299.1
314.0 [0..6] [606..49]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGQPFEAFR KNRKRKKTKN KKKRRNNNNS KNKTPNTFPN EIEEQDPVSS LPTFPAKKFG  60
   61 LKLQLTLTSS PTNSSSPISS SSPTNGGFKQ FAQQYPQLCE SSEGMTRLPQ SLSQPCLSQP 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.69897
Match: 2oucA
Description: No description for 2oucA was found.

Predicted Domain #2
Region A:
Residues: [121-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGDGITLITP NIYLGSQIDS LDETMLDALD ISVVINLSMT CPKSVCIKED KNFMRIPVND  60
   61 SYQEKLSPYF PMAYEFLEKC RRAGKKCLIH CLAGISRSPT LAISYIMRYM KMGSDDAYRY 120
  121 VKERRPSISP NFNFMGQLLE YENVLIKDHV LDYNQASRPH RHMDYYGPSD LCPPKVPKSA 180
  181 SSNCVFPGST HDESSPSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.0
Match: 2g6zA
Description: No description for 2g6zA was found.

Predicted Domain #3
Region A:
Residues: [319-410]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSVSEGSAAS EPETSSSAAS SSSTASAPPS MPSTSEQGTS SGTVNVNGKR NMTMDLGLPH  60
   61 RPKALGLPSR IGTSVAELPS PSTELSRLSF NG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [411-606]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEAIAPSTPI LNFTNPCFNS PIIPVASSSR EVILTLPTPA ASSSSSTSSE PSFDFSSFES  60
   61 SSSSSIVVEN PFFASTEVPA GSSSISTPSG SQSTPASASS SAASRCRMKG FFKVFSKKAP 120
  121 ASTSTPASST PGTSRAARPE CLRSSGIIIS APVLAITEEE DAESPESGFN EPEVGEEDDD 180
  181 SVSICSTSSL EIPCHQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle