| Protein: | nhr-106 |
| Organism: | Caenorhabditis elegans |
| Length: | 382 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-106.
| Description | E-value | Query Range |
Subject Range |
|
|
269.0 | [0..2] | [381..271] |
|
Region A: Residues: [1-77] |
1 11 21 31 41 51
| | | | | |
1 MQTTCEICEV PAHGIHFGAI TCRGCAAFFR RAVNTKTNRK SCKYSSNCTN FTGKFPQCKS 60
61 CRMRKCIKMG MMPEKVK
|
| Detection Method: |  |
| Confidence: | 19.0 |
| Match: | 1lo1A |
| Description: | Steroid hormone receptor Err2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.18770607371139 | bayes_pls_golite062009 |
| protein binding | 0.699012253331291 | bayes_pls_golite062009 |
|
Region A: Residues: [78-382] |
1 11 21 31 41 51
| | | | | |
1 VMQPISQSLE IFVSRPNLIL FTNNYDKTRN YIDVSNLITR GLEILKQGFP TPLGIGKTNL 60
61 ERMASGVEFS TAESKIVDVV TGKSVSMVWE FDFISTAKWL TRLQDFCTLP MRIQMQLLQT 120
121 IWHVWSRMYK VVKSSELRKK HADSSNLFQV LDQFHVNLGT TKLDVSWLTT YSYEEIKYFL 180
181 YGIDDDIYLQ SAITAASKLE LTDVELTYMA AQTCFQYAQN RFAGTEIAEV CAKFQEILAN 240
241 DLHTYYTKDH KRTSNYAGKL SQMLKCVQEI QKSIRTTRER TTIARTFDIY ITDFSNPEMF 300
301 IDSGC
|
| Detection Method: | |
| Confidence: | 31.154902 |
| Match: | 1xdkB |
| Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.07679393058916 | bayes_pls_golite062009 |
| protein binding | 1.4692467191721 | bayes_pls_golite062009 |
| transcription regulator activity | 1.38569381220638 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.33970394025402 | bayes_pls_golite062009 |
| receptor activity | 1.27827487658808 | bayes_pls_golite062009 |
| DNA binding | 1.07558579137079 | bayes_pls_golite062009 |
| nucleic acid binding | 0.843756208408716 | bayes_pls_golite062009 |
| signal transducer activity | 0.729591594314124 | bayes_pls_golite062009 |
| molecular transducer activity | 0.729591594314124 | bayes_pls_golite062009 |
| transcription factor activity | 0.523911554416 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.14253203697325 | bayes_pls_golite062009 |
| transcription activator activity | 0.0654022419611198 | bayes_pls_golite062009 |
