| Protein: | nhr-103 |
| Organism: | Caenorhabditis elegans |
| Length: | 394 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-103.
| Description | E-value | Query Range |
Subject Range |
|
|
275.0 | [0..1] | [392..447] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MPAPLFLSGP CEICGQKTSG RHFGVLSCRS CAAFFRRSAT WSRKKVQCVK GTCKIFEDGK 60
61 FNCKQCRLKK CVEVGMDSKK FQTNRDLISS CSV
|
| Detection Method: |  |
| Confidence: | 19.69897 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| binding | 1.18770607371139 | bayes_pls_golite062009 |
| protein binding | 0.699012253331291 | bayes_pls_golite062009 |
|
Region A: Residues: [94-394] |
1 11 21 31 41 51
| | | | | |
1 PQSLCNFLGR PEFILCCEPD KASVFKTTID VTYLVDMAKN LLEKDPCQCP LSNSLEQLST 60
61 TLENMRGMKL NKETQIIKKL GKNESLKTWE QGFLRAVEWF SNFSEFRELD ENLKMEILKT 120
121 CWVSWIRLDK LSETANKRVN ATLDNSLLMV GNDSCMHMND YEVDLSWCTN YSLEQLAFFF 180
181 LTPDDEKNYR QLIQDMVDLN PSSTEISYML LQLSLEHAGK RLQGDILEAT ESLVQAQANQ 240
241 LHDYYAKKLK LSNYSSRLTQ LMKITRTLEA DMRLRIEKKK VADVFNIFKI QFSHPEMFET 300
301 T
|
| Detection Method: | |
| Confidence: | 34.0 |
| Match: | 1xdkB |
| Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.07679393058916 | bayes_pls_golite062009 |
| protein binding | 1.4692467191721 | bayes_pls_golite062009 |
| transcription regulator activity | 1.38569381220638 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.33970394025402 | bayes_pls_golite062009 |
| receptor activity | 1.27827487658808 | bayes_pls_golite062009 |
| DNA binding | 1.07558579137079 | bayes_pls_golite062009 |
| nucleic acid binding | 0.843756208408716 | bayes_pls_golite062009 |
| signal transducer activity | 0.729591594314124 | bayes_pls_golite062009 |
| molecular transducer activity | 0.729591594314124 | bayes_pls_golite062009 |
| transcription factor activity | 0.523911554416 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.14253203697325 | bayes_pls_golite062009 |
| transcription activator activity | 0.0654022419611198 | bayes_pls_golite062009 |
