YRC Public Data Repository - Protein Structure Prediction

Protein:	dhs-2
Organism:	Caenorhabditis elegans
Length:	368 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dhs-2.

Description	E-value	Query Range	Subject Range
gi\|255313843 - gi\|255313843\|ref\|ZP_05355426.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255516524 - gi\|255516524\|ref\|ZP_05384200.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255649624 - gi\|255649624\|ref\|ZP_05396526.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|254974717 - gi\|254974717\|ref\|ZP_05271189.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255092105 - gi\|255092105\|ref\|ZP_05321583.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile CI... gi\|90575404, gi\|... - gi\|90575404\|ref\|ZP_01231888.1\| hypothetical protein CdifQ_02001165 [Clostridium difficile QCD-32g58]...	275.0	[0..64]	[323..1]

Back

Predicted Domain #1

Region A:
Residues: [1-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVNISLSL ALNVTDKEPD FQSLEMLGIL YWILNLTVVE SVFYLVVAFL LFLIGRHFIE  60
   61 KLQINNLSKR AVFITGCDSG FGRGLALKCL EQGMPVFAGC LTEQGIESLS AEARKSIGNG 120
  121 RSLDAFLMDV TSDESVGEVA KRLEKKCEQY GGLHAVVNNA GITGKHIADD FLDINEYLKV 180
  181 ANINLWGPIR TTMAVKKLLK KARGRVVTVA SICARVGLPG LGPYSVSKYG VSAYCDVIRQ 240
  241 ELRPFGISVH VLEPGFFNTP LINREKIDAE ILEAWKHAPN EVKQEYGEKF FNDARESTHL 300
  301 FLNSVASSQI SLVVDAYFHA ITSKHPRSRY QIGWDSILLF IPFSYLPTGL QDYIFAAAGL 360
  361 FLPKPACR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.0
Match:	2p68A
Description:	No description for 2p68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits