YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE26163
Organism: Caenorhabditis elegans
Length: 431 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE26163.

Description E-value Query
Range
Subject
Range
gi|41205692 - gi|41205692|gb|AAR99612.1| dTDP-glucose 4,6-dehydratase [Geobacillus stearothermophilus]
291.0 [0..58] [390..1]

Back

Predicted Domain #1
Region A:
Residues: [1-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSVLGRSGL GARQAVSVVG SQNFSSAVTS AENAHPEPRV SSQSAQFRKG AGGRASFSGN  60
   61 VVTVFGASGF LGLPVVNKFA KNGSQIIIPY RQDPYYMREH KVLGELGQVL YFPFELMDEE 120
  121 SIRKAVKYSN VVINLIGTRV PTGKYNYYDV NDTGARRLAR ICKEMGVEKF VHLSALGATT 180
  181 QPQKGHFVAK SQFLHSKGLG EVAVREEFPE ATIIRPSVIY GELDGFIQYY VSRWRKTPLD 240
  241 YVYLYKKGEE TYKMPIWVGD VAAGIQSAVN DPTAKGHTYE FVGPHCYQLS ELIDFMYKKA 300
  301 HCLSDFGFRY KRHGMPDPYF MALTMATELY GKVFKCKVPL NREWMEFVEV QSDILTGERT 360
  361 LADLGVRRLT EFELAGGQQA FYRSFNRYFE EQYGELPAPS LPLRSPPLTK KNTGRGATGI 420
  421 KSETSKNVAF N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.0
Match: 1bxkA
Description: dTDP-glucose 4,6-dehydratase (RmlB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor 8.29933408515789 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 7.95797278304506 bayes_pls_golite062009
oxidoreductase activity 6.99432781333161 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.24660140528789 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.70133031193062 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 2.63737732090553 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 2.6095138085648 bayes_pls_golite062009
cation transmembrane transporter activity 2.55467700009568 bayes_pls_golite062009
ion transmembrane transporter activity 2.38954645656667 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 2.13774251017711 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.04161745256941 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.96417104841008 bayes_pls_golite062009
substrate-specific transporter activity 1.91557560670782 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity 1.27032644348698 bayes_pls_golite062009
kinase activity 0.411492042144505 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.407724015989551 bayes_pls_golite062009
protein kinase activity 0.367600236406166 bayes_pls_golite062009
binding 0.355184540089764 bayes_pls_golite062009
NAD or NADH binding 0.33908018537574 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.28434566828041 bayes_pls_golite062009
protein serine/threonine kinase activity 0.0954335766234867 bayes_pls_golite062009
coenzyme binding 0.0812901552017963 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle