| Protein: | nhr-85 |
| Organism: | Caenorhabditis elegans |
| Length: | 514 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-85.
| Description | E-value | Query Range |
Subject Range |
|
|
302.0 | [0..4] | [426..108] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MDLSTSGSLP CHLPLSLLTN LQTPPIDTSF SSPPATSSSS LLSPSPSSAF RPVVPKSLMN 60
61 PQPAMDTFYM SAIQSLVVST TNDDQYSEHG ALEGSKSLAK DEN
|
| Detection Method: |  |
| Confidence: | 1.04 |
| Match: | 1pk8A |
| Description: | Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [104-202] |
1 11 21 31 41 51
| | | | | |
1 ASTSAGTILC QVCSDKASGF HYGVFACEGC KGFFRRSIQQ KITYRACTRA EDCLILRNNR 60
61 NRCQCCRLKK CLAVGMSRDA VRFGRVPKRE KARMFEEMQ
|
| Detection Method: | |
| Confidence: | 26.69897 |
| Match: | 1a6yA |
| Description: | Orphan nuclear receptor reverb |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.18770607371139 | bayes_pls_golite062009 |
| protein binding | 0.699012253331291 | bayes_pls_golite062009 |
|
Region A: Residues: [203-514] |
1 11 21 31 41 51
| | | | | |
1 KTNVQSQRDQ IAIQYENLTE VMHKINQAFG TLQATLEKCT GPIYTDRCPI TSNFIVIPLK 60
61 AAIDFANSIP AFLSITQTQR VHLLQNSVFD VMLLASASAS TSQHFPPGGL TYDQSSANPI 120
121 IPQAIQSISA RIRQLPPQTV PILTAIAVCQ ADLLPESQQP MLLAERLWCV LGKLGGIQSL 180
181 ATAPSLLADV RTLRQWHSDR LRQMSQISQH FSQNLLIAPV AAAAPVLLPP AFLSPPASAT 240
241 STSSSSVKSE FIERHPSIAS LLERPRRISS SGAQEPLNLS LPHVRHQVKR DVDSDEQLEE 300
301 MKVSPVPTTL SE
|
| Detection Method: | |
| Confidence: | 39.69897 |
| Match: | 1xdkB |
| Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.07679393058916 | bayes_pls_golite062009 |
| protein binding | 1.4692467191721 | bayes_pls_golite062009 |
| transcription regulator activity | 1.38569381220638 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.33970394025402 | bayes_pls_golite062009 |
| receptor activity | 1.27827487658808 | bayes_pls_golite062009 |
| DNA binding | 1.07558579137079 | bayes_pls_golite062009 |
| nucleic acid binding | 0.843756208408716 | bayes_pls_golite062009 |
| signal transducer activity | 0.729591594314124 | bayes_pls_golite062009 |
| molecular transducer activity | 0.729591594314124 | bayes_pls_golite062009 |
| transcription factor activity | 0.523911554416 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.14253203697325 | bayes_pls_golite062009 |
| transcription activator activity | 0.0654022419611198 | bayes_pls_golite062009 |
