| Protein: | mab-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 200 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mab-5.
| Description | E-value | Query Range |
Subject Range |
|
|
126.0 | [0..101] | [200..14] |
|
Region A: Residues: [1-117] |
1 11 21 31 41 51
| | | | | |
1 MSMYPGWTGD DSYWAGAGTT ASSQSASSGT SASASSSAAA AAAANNLKTY ELYNHTYMNN 60
61 MKHMLAAGWM DNSSNPFAYN PLQATSANFG ETRTSMPAIS QPVFPWMKMG GAKGGES
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [118-200] |
1 11 21 31 41 51
| | | | | |
1 KRTRQTYSRS QTLELEKEFH YHKYLTRKRR QEISETLHLT ERQVKIWFQN RRMKHKKEAK 60
61 GEGGSNESDE ESNQDEQNEQ HSS
|
| Detection Method: | |
| Confidence: | 27.69897 |
| Match: | 1homA |
| Description: | DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.57523737355937 | bayes_pls_golite062009 |
| DNA binding | 3.00143272905695 | bayes_pls_golite062009 |
| nucleic acid binding | 2.89825020286436 | bayes_pls_golite062009 |
| transcription factor activity | 2.53664874743748 | bayes_pls_golite062009 |
| transcription repressor activity | 1.84054423341798 | bayes_pls_golite062009 |
| binding | 1.68817361068715 | bayes_pls_golite062009 |
| protein binding | 1.16239587634422 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.14821760889085 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.46503550280898 | bayes_pls_golite062009 |
