| Protein: | lin-17 |
| Organism: | Caenorhabditis elegans |
| Length: | 558 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-17.
| Description | E-value | Query Range |
Subject Range |
|
|
348.0 | [0..1] | [514..456] |
|
Region A: Residues: [1-181] |
1 11 21 31 41 51
| | | | | |
1 MMHSLGIILL FIPLATGSIF DQAVKGKCIP IDIELCKDLP YNYTYFPNTI LHNDQHTLQT 60
61 HTEHFKPLMK TKCHPHIHFF ICSVFAPMCP IGMPQAVTSC KSVCEQVKAD CFSILEEFGI 120
121 GWPEPLNCAQ FPDPPELCMK PTEDEITGGF SAPRLPTKGS SSSSSKPTGC PSDLVDVDPH 180
181 D
|
| Detection Method: |  |
| Confidence: | 34.69897 |
| Match: | 1ijyA |
| Description: | Frizzled 8 (FZ8) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| Wnt receptor activity | 5.34849208575619 | bayes_pls_golite062009 |
| Wnt-protein binding | 4.48351937520811 | bayes_pls_golite062009 |
| transmembrane receptor activity | 4.38708793497137 | bayes_pls_golite062009 |
| receptor activity | 4.1046853496316 | bayes_pls_golite062009 |
| signal transducer activity | 3.17034085692897 | bayes_pls_golite062009 |
| molecular transducer activity | 3.17034085692897 | bayes_pls_golite062009 |
| binding | 1.75284371400205 | bayes_pls_golite062009 |
| protein binding | 1.1012033332744 | bayes_pls_golite062009 |
|
Region A: Residues: [182-558] |
1 11 21 31 41 51
| | | | | |
1 PKSHCAFACQ SNVMFSTDNK RMVRSWSIWF AAANAGVALF SFLTFAIDRK RFRFPERCVF 60
61 YLSLCIFISS LPYLTPLFID APIRSCHALG NGRSYLSIGT FDNSYCLASF LLNYFFSTAA 120
121 ALWWLMFSFT LYLSGGRKWV PEGIEACSSY VHFVAWGLSS LATIIVLIFN KVDASELTAL 180
181 CSVGNLNSIA LLWFVIVPRT ICIVIGTCFI VGGFASMCRE RISFRTRGTD TSKLEKLMVK 240
241 MGFFCALFIL PNVIELVCQC YKFMILTQWT RMTIDCKQQS GACHRPTPPQ AEIYMTAVIS 300
301 SLATGFSCLM WVLSAKTVHA WKNFIFCGMC SSAPVKNPIE PSTRPLLEPP TAPPPQPPVY 360
361 MQMATNPQNS WRPSKVV
|
| Detection Method: | |
| Confidence: | 17.09691 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
