| Protein: | ceh-24 |
| Organism: | Caenorhabditis elegans |
| Length: | 299 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ceh-24.
| Description | E-value | Query Range |
Subject Range |
|
|
161.0 | [0..2] | [287..105] |
|
Region A: Residues: [1-79] |
1 11 21 31 41 51
| | | | | |
1 MSEKETPSPV LDVKKEKNEE TGIDEEKSSE DDCSKRSKVK SNPSKFSVNS ILSPLESLVR 60
61 VQQQLLKMAA SKSGTPGTN
|
| Detection Method: |  |
| Confidence: | 8.522879 |
| Match: | 6paxA |
| Description: | Pax-6 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 1.62959077995642 | bayes_pls_golite062009 |
| binding | 1.48969201384255 | bayes_pls_golite062009 |
| DNA binding | 1.2137926921894 | bayes_pls_golite062009 |
| nucleic acid binding | 1.02805703044131 | bayes_pls_golite062009 |
| transcription factor activity | 0.89626527070971 | bayes_pls_golite062009 |
| transcription repressor activity | 0.25215835583853 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.10684552272643 | bayes_pls_golite062009 |
| protein binding | 0.012115247005138 | bayes_pls_golite062009 |
|
Region A: Residues: [80-149] |
1 11 21 31 41 51
| | | | | |
1 AGVPGAFPYG PGRLPGNYFA GPFPGYSGAQ PNWYNGNDPR FAAAAALLPC SIDPVRSAIN 60
61 HQFSMSSMSQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [150-217] |
1 11 21 31 41 51
| | | | | |
1 RRKRRVLFSQ AQVYELERRF KQAKYLTAPE REQLANSIRL TPTQVKIWFQ NHRYKCKRQE 60
61 KEKAMSGL
|
| Detection Method: | |
| Confidence: | 16.045757 |
| Match: | 1fttA |
| Description: | THYROID TRANSCRIPTION FACTOR 1 HOMEODOMAIN (RATTUS NORVEGICUS) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 1.62959077995642 | bayes_pls_golite062009 |
| binding | 1.48969201384255 | bayes_pls_golite062009 |
| DNA binding | 1.2137926921894 | bayes_pls_golite062009 |
| nucleic acid binding | 1.02805703044131 | bayes_pls_golite062009 |
| transcription factor activity | 0.89626527070971 | bayes_pls_golite062009 |
| transcription repressor activity | 0.25215835583853 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.10684552272643 | bayes_pls_golite062009 |
| protein binding | 0.012115247005138 | bayes_pls_golite062009 |
|
Region A: Residues: [218-299] |
1 11 21 31 41 51
| | | | | |
1 GHSEDGSSPP PDNDDDDDKY SIEMDDKDDE EEEESEKPVL KPSGVFGLPY PPNAAAAAAA 60
61 AAAAFNFPFA AQGPNPAYYM RW
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
