| Protein: | lin-28 |
| Organism: | Caenorhabditis elegans |
| Length: | 227 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-28.
| Description | E-value | Query Range |
Subject Range |
|
|
200.0 | [0..46] | [227..302] |
|
Region A: Residues: [1-126] |
1 11 21 31 41 51
| | | | | |
1 MSTVVSEGRN DGNNRYSPQD EVEDRLPDVV DNRLTENMRV PSFERLPSPT PRYFGSCKWF 60
61 NVSKGYGFVI DDITGEDLFV HQSNLNMQGF RSLDEGERVS YYIQERSNGK GREAYAVSGE 120
121 VEGQGL
|
| Detection Method: |  |
| Confidence: | 13.09691 |
| Match: | 1g6pA |
| Description: | Major cold shock protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.99628257193121 | bayes_pls_golite062009 |
| nucleic acid binding | 1.55535848952041 | bayes_pls_golite062009 |
| DNA binding | 0.969246048450989 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.890081297694346 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.75578703467841 | bayes_pls_golite062009 |
| protein binding | 0.0528188351789111 | bayes_pls_golite062009 |
|
Region A: Residues: [127-227] |
1 11 21 31 41 51
| | | | | |
1 KGSRIHPLGR KKAVSLRCFR CGKFATHKAK SCPNVKTDAK VCYTCGSEEH VSSICPERRR 60
61 KHRPEQVAAE EAEAARMAAE KSSPTTSDDD IREKNSNSSD E
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 1aafA |
| Description: | NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1 |
Matching Structure (courtesy of the PDB): |
|
