| Protein: | cogc-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 580 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cogc-5.
| Description | E-value | Query Range |
Subject Range |
|
|
292.0 | [0..2] | [575..728] |
|
Region A: Residues: [1-179] |
1 11 21 31 41 51
| | | | | |
1 MADEDILVDG RPLSSLKVTE LKEELENRQL STKGVKAVLQ ERLREALAAQ GDDPVVDEQN 60
61 PIVAGYLARQ SAALAEARKR TESEASGTTT PQSEVSPSKQ SEASPRKGRT PRKEKKDVEP 120
121 EAEPEPEADI APEPEKVAIV EKPEPKPEPI TETEASPSKA SEKDAAVEVS VEKVDAETA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [180-407] |
1 11 21 31 41 51
| | | | | |
1 QESDSPQEAE KEKTEPQVEL ENGGQEEDEP DRDESIEKQP EKEDDGDELD YGDDEEKEQK 60
61 DDESMDAEDA KEEKVVQIEK EKKEDKDDGV KKEEKVREVS RRRVSSPSSR HPVSNVVHIR 120
121 GLTRPFTEGQ LRAEIQKNCG EIVDLWMDKV KSHCFVKLNS DADAGNVISA MNNVVWPDGN 180
181 PKRLSIVYDT EDNLIKHRNG LEATIAEPAK IGGGRADRLS TTSQSSIL
|
| Detection Method: | |
| Confidence: | 1.61 |
| Match: | 1sjrA |
| Description: | NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.14071486875026 | bayes_pls_golite062009 |
| nucleic acid binding | 1.29727093749465 | bayes_pls_golite062009 |
| protein binding | 0.339576983430853 | bayes_pls_golite062009 |
|
Region A: Residues: [408-580] |
1 11 21 31 41 51
| | | | | |
1 GGKTNFQITM QNVLRDNDKL DSERKRERGS IQSRLTRIEN KDQVKDEKKD EKKEDRKRKR 60
61 SETPPFSRGA GFMDEKKARN EERERRREGP RSEERRKVVV EEEEAPKKSL DQLFKKTVAL 120
121 PPIYYLPLTE EQIAAKEAEK SAKGKERAET TSDRDRPHRV DRNDRGDRPR HRD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
