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Protein Overview: cogc-5

General Information:
Name(s) found: cogc-5 / CE23592 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00016601 locus:acin-1 status:Confirmed UniProt:P91156 protein_id:CCD65149.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 580 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: gonad morphogenesis [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    regulation of cell migration [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEDILVDG RPLSSLKVTE LKEELENRQL STKGVKAVLQ ERLREALAAQ GDDPVVDEQN  60
   61 PIVAGYLARQ SAALAEARKR TESEASGTTT PQSEVSPSKQ SEASPRKGRT PRKEKKDVEP 120
  121 EAEPEPEADI APEPEKVAIV EKPEPKPEPI TETEASPSKA SEKDAAVEVS VEKVDAETAQ 180
  181 ESDSPQEAEK EKTEPQVELE NGGQEEDEPD RDESIEKQPE KEDDGDELDY GDDEEKEQKD 240
  241 DESMDAEDAK EEKVVQIEKE KKEDKDDGVK KEEKVREVSR RRVSSPSSRH PVSNVVHIRG 300
  301 LTRPFTEGQL RAEIQKNCGE IVDLWMDKVK SHCFVKLNSD ADAGNVISAM NNVVWPDGNP 360
  361 KRLSIVYDTE DNLIKHRNGL EATIAEPAKI GGGRADRLST TSQSSILGGK TNFQITMQNV 420
  421 LRDNDKLDSE RKRERGSIQS RLTRIENKDQ VKDEKKDEKK EDRKRKRSET PPFSRGAGFM 480
  481 DEKKARNEER ERRREGPRSE ERRKVVVEEE EAPKKSLDQL FKKTVALPPI YYLPLTEEQI 540
  541 AAKEAEKSAK GKERAETTSD RDRPHRVDRN DRGDRPRHRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..179] MSA 1.211996 View MSA. No confident structure predictions are available.
    2 View Details [180..407] FFAS03 1.61 NMR Structure of RRM2 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1)
    3 View Details [408..580] MSA 2.242996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.14071486875026 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.29727093749465 bayes_pls_golite062009
  • protein binding
    		•  0.339576983430853 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle