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View Structure Prediction Details

Protein: ccf-1
Organism: Caenorhabditis elegans
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ccf-1.

Description E-value Query
Range		 Subject
Range
gi|125977180, gi... - gi|54641371|gb|EAL30121.1| GA19054-PA [Drosophila pseudoobscura], gi|125977180|ref|XP_001352623.1| G...
 388.0 [0..1] [301..2]

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Predicted Domain #1
Region A:
Residues: [1-310] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSGGAG GAGGASGAPE VKIHNVYMSN VEEEFARIRG FVEDYPYVAM DTEFPGVVAT  60
   61 PLGTFRSKED FNYQQVFCNV NMLKLIQVGF AMVNDKGELP PTGDVWQFNF NFSFAEDMFS 120
  121 HESVEMLRQA GIDFTLLQNN GIPTAVFGEL LTTSGLITDP RITWLTFSSG YDFGYLLKSI 180
  181 TLGDLPKEES TFFMCHKTLF PTSFDIKILL RTPNCASAKL KGGLQEVADQ LDVKRQGVRH 240
  241 QAGSDALLTA ATFFKIKKQF FGDNWNQIAP LICGHMFGLG SSLSLFHSSG STSRLGDETP 300
  301 QGLIGVPQQA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 98.0
Match: 2d5rA
Description: No description for 2d5rA was found.

Predicted functions:

Term Confidence Notes
ribonuclease activity 5.30591758406946 bayes_pls_golite062009
exoribonuclease activity 3.71639182685131 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 3.59362615133405 bayes_pls_golite062009
3'-5'-exoribonuclease activity 3.1992647486402 bayes_pls_golite062009
nuclease activity 3.11657409772275 bayes_pls_golite062009
ribonuclease H activity 2.91966688044755 bayes_pls_golite062009
hydrolase activity 2.78602644579272 bayes_pls_golite062009
2.73492915653996 bayes_pls_golite062009
endonuclease activity 2.63074055051349 bayes_pls_golite062009
endoribonuclease activity 2.59247838057313 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.57498413015114 bayes_pls_golite062009
transcription regulator activity 2.20855917457806 bayes_pls_golite062009
nucleic acid binding 2.14285769817394 bayes_pls_golite062009
exonuclease activity 1.87925169250843 bayes_pls_golite062009
DNA binding 1.86594005896134 bayes_pls_golite062009
3'-5' exonuclease activity 1.44123900197846 bayes_pls_golite062009
RNA binding 1.43996903907704 bayes_pls_golite062009
transcription activator activity 1.43417601839369 bayes_pls_golite062009
binding 1.35497934205068 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 1.32513822925426 bayes_pls_golite062009
catalytic activity 1.25233849524628 bayes_pls_golite062009
transcription factor activity 1.17659544650821 bayes_pls_golite062009
protein binding 1.08578027658199 bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 0.71760273606768 bayes_pls_golite062009
endoribonuclease activity, producing 5'-phosphomonoesters 0.708753843279937 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.615788727884275 bayes_pls_golite062009
endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 0.598360955770972 bayes_pls_golite062009
deoxyribonuclease activity 0.24906263529692 bayes_pls_golite062009
DNA-directed DNA polymerase activity 0.09423425042945 bayes_pls_golite062009
DNA polymerase activity 0.0189279348688405 bayes_pls_golite062009
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